Showing : RNASeq • reset
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74
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Identifying potentially associated gene set to drug response using GSVA
drug RNASeq GSVA
written 2 days ago by • 0
0
votes
1
reply
72
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eRNAs count
RNASeq DESeq2
updated 2 days ago by ★ 4.5k • written 2 days ago by • 0
1
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8
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963
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Combining RNAseq and microarray data using edgeR/limma-voom
limma voom RNASeq edgeR Microarray
written 16 days ago by • 0
0
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0
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118
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Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes RNASeq
16 days ago brayas13 • 0
3
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11
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695
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Highly DE genes but small count difference within conditions
RNASeq DESeq2 RNASeqData
written 6 weeks ago by • 0
2
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4
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383
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RNASeq Time Course Question
DESeq2 RNASeq TimeCourse
6 weeks ago jihoon.kim.1495 ▴ 10
1
vote
1
reply
249
views
Deseq2 sfType
Microbiome DESeq2 RNASeq
updated 7 weeks ago by 67k • written 7 weeks ago by • 0
1
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2
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432
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Poor dispersion fit in DESeq2
limma DESeq2 RNASeq edgeR
updated 7 weeks ago by 42k • written 8 weeks ago by ▴ 10
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3
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367
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Meta-analysis on RNA-seq data sets
meta-analysis sva Combat_Seq RNAseq
8 weeks ago • updated 7 weeks ago Travis • 0
0
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5
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1.7k
views
DESeq2 Multi-factor design not full rank
RNASeq DESeq2
written 3.5 years ago by • 0
0
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2
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866
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Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
RNASeq DESeq2
updated 11 weeks ago by ★ 1.4k • written 11 weeks ago by • 0
3
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5
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909
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DESeq2: How to Compare the Condition Effects of Two Different Treatments?
DESeq2 RNAseq DifferentialExpression
updated 3 months ago by ★ 1.4k • written 3 months ago by • 0
2
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3
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494
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RUV - Does my data need further normalisation?
EDASeq plotRLE RNAseq
3 months ago BioinfGuru ▴ 70
3
votes
6
replies
788
views
A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
written 3 months ago by • 0
4
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3
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1.2k
views
DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FALSE], alpha_hat = alpha_hat[fitidx], : 4189rows had non-positive e…
DESeq2 RNAseq
written 4 months ago by ▴ 10
0
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3
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552
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Error when trying to do different pairwise comparisons and lfcshrink than what's listed on resultsNames()
RNASeqData DESeq2 RNASeq DifferentialExpression
updated 4 months ago by ★ 4.5k • written 4 months ago by • 0
1
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4
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1.4k
views
Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
GSVA GSVAdata RNAseq
4 months ago Lucy ▴ 60
0
votes
4
replies
553
views
DE analysis in EdgeR /Can any one please help me.
RNASeqData DEGraph RNASeq edgeR DegNorm
written 4 months ago by • 0
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0
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311
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
4 months ago JG13 • 0
0
votes
1
reply
351
views
Significant genes in DESeq2 analysis
DESeq2 RNASeq
updated 5 months ago by 67k • written 5 months ago by • 0
1
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9
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1.3k
views
Most enriched pathway is not expressed when modifying universe parameter
DESeq2 clusterProfiler Pathways RNASeq org.Mm.eg.db
updated 5 months ago by 67k • written 5 months ago by ▴ 10
1
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3
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542
views
Including infectivity information to RNA-Seq analysis
RNASeqData DESeq2 RNA-Seq RNASeq
updated 5 months ago by 67k • written 5 months ago by ▴ 50
2
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2
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609
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How to remove batch effect to combine RNAseq data from 2 different experiments?
BatchQC BatchEffect RNASeq
updated 5 months ago by ▴ 10 • written 6 months ago by • 0
0
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6
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1.2k
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq Rsubread
6 months ago • updated 5 months ago atan • 0
3
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2
replies
622
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
6 months ago mohammedtoufiq91 ▴ 10
0
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0
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278
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq scRNAseq
6 months ago Bibi • 0
10
votes
11
replies
2.4k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 6 months ago by • 0 • written 7.2 years ago by ▴ 80
1
vote
3
replies
615
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression TimeCourse timeOmics edgeR RNAseq
updated 6 months ago by 51k • written 6 months ago by • 0
0
votes
3
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732
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 6 months ago by ★ 4.5k • written 6 months ago by • 0
0
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1
reply
472
views
DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
DESeq2 RNAseq
updated 7 months ago by 42k • written 7 months ago by • 0
0
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2
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433
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limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 7 months ago by • 0
0
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2
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562
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RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
7 months ago catv • 0
5
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3
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828
views
Log-cpm values from limma
limma edgeR RNASeq
updated 6 months ago by 51k • written 7 months ago by • 0
0
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1
reply
545
views
ONT long-read RNA sequencing - data analysis options
DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq
updated 7 months ago by 42k • written 7 months ago by • 0
0
votes
1
reply
473
views
Can you find the correct transcript in scRNA seq data
scRNAseq RNAseq
updated 7 months ago by ★ 4.5k • written 7 months ago by • 0
0
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2
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974
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Filtering and Reference Level for DESeq2
DESeq2 GeneFiltering RNAseq
8 months ago kcarey • 0
2
votes
2
replies
503
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma fit design RNASeq edgeR
8 months ago Sabiha ▴ 20
0
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2
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1.2k
views
RNA sequencing raw counts gene filtering
DESeq2 limma RNAseq
8 months ago kcarey • 0
1
vote
4
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540
views
DESeq2 Replicates
DESeq2 RNASeq
8 months ago kcarey • 0
1
vote
3
replies
647
views
DESEQ2 Batch Effect
DESeq2 BatchEffect RNASeq
updated 8 months ago by ★ 1.4k • written 8 months ago by ▴ 10
0
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4
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648
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
8 months ago mperalc • 0
0
votes
2
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730
views
Error in featureCounts matrix
GenomeWideAssociation countsimQC RNASeq
updated 8 months ago by 51k • written 8 months ago by • 0
3
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5
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1.0k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 8 months ago by 42k • written 9 months ago by ▴ 10
2
votes
1
reply
482
views
Limma Question
DESeq2 BatchEffect limma RNASeq
updated 8 months ago by 42k • written 8 months ago by ▴ 10
3
votes
6
replies
1.1k
views
Average biological replicates in RNA-seq
Mfuzz RNASeq
9 months ago boczniak767 ▴ 740
0
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0
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492
views
Differential expression analysis between different species
DEG RNASeqData DifferentialExpression SCBN RNASeq
9 months ago Abril • 0
2
votes
2
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983
views
Graphing DEseq2 Normalized Counts using ggplot2
DESeq2 Normalization RNASeq
9 months ago jackafiore • 0
1
vote
2
replies
1.7k
views
How to combine a bulk and pseudobulk dataset?
DESeq2 limma RNASeq RNASeqData
written 18 months ago by • 0
0
votes
4
replies
695
views
Ballgown error in scan for c.tab files
ballgown RNASeq
9 months ago candacenewcome • 0
1
vote
3
replies
656
views
DESeq2 analysis on time-series RNA experiment
RNASeqData DESeq2 RNASeq
9 months ago island • 0
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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