Bioconductor RNASeq

Showing : RNASeq • reset

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1.9k

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sgseq rnaseq

updated 23 hours ago by Leonard Goldstein ▴ 220 • written 6.7 years ago by Sylvain Foisy ▴ 80

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215

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 2 days ago by Gordon Smyth 50k • written 3 days ago by Ashley • 0

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209

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 14 days ago by ATpoint ★ 4.1k • written 15 days ago by james.zhang20 • 0

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165

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DESeq2 RNAseq

updated 22 days ago by Michael Love 42k • written 22 days ago by kcarey • 0

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188

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limma RNASeq voom

written 24 days ago by taur.vil • 0

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236

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technicalReplicates BatchEffect limma RNASeq

27 days ago • updated 24 days ago catv • 0

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304

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limma edgeR RNASeq

updated 6 days ago by Gordon Smyth 50k • written 28 days ago by Shaimaa Gamal • 0

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124

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 28 days ago by Michael Love 42k • written 28 days ago by 09191919 • 0

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886

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clusterProfiler RNASeq

updated 22 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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949

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SingleCell RNASeq RNASeqData scRNAseq

updated 29 days ago by wichaidi • 0 • written 18 months ago by irvin.ng • 0

10 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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