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RNA seq
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0
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9
replies
3.4k
views
How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 4.3 years ago by
bernatgel
▴ 150 • written 5.3 years ago by
adeler001
• 0
2
votes
5
replies
4.0k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 4.8 years ago by
Steve Lianoglou
★ 13k • written 4.8 years ago by
svlachavas
▴ 840
0
votes
3
replies
999
views
Normalization of RNA seq data
RNA seq
cpm
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
isabel.pieterse
• 0
4
votes
4
replies
1.2k
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 6 months ago by
Sara
• 0 • written 5.2 years ago by
116100016
• 0
1
vote
4
replies
1.1k
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 5.2 years ago by
James W. MacDonald
67k • written 5.2 years ago by
abf
▴ 30
0
votes
0
replies
669
views
searching for specific RNA sequences
rna seq
5.2 years ago
adeler001
• 0
0
votes
2
replies
1.0k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 5.3 years ago by
Leonard Goldstein
▴ 260 • written 5.3 years ago by
116100016
• 0
0
votes
1
reply
687
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
adeler001
• 0
0
votes
2
replies
1.2k
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
adeler001
• 0
1
vote
5
replies
1.5k
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
mahes.muniandy
• 0
5
votes
3
replies
1.3k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 5.7 years ago by
Peter Langfelder
★ 3.0k • written 5.7 years ago by
agustin.gonvi
▴ 20
1
vote
2
replies
2.4k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
5.8 years ago
Mozart
▴ 30
0
votes
0
replies
1.9k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
7.0 years ago
lawarde.ankita1
▴ 30
13 results • Page
1 of 1
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Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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