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RNA seq
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0
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9
replies
2.8k
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How to create manhattan plot with DESeq2
deseq2
mahattan plot
RNA Seq
updated 3.7 years ago by
bernatgel
▴ 150 • written 4.7 years ago by
adeler001
• 0
2
votes
5
replies
3.4k
views
Possible batch effect correction with RNA-Seq data when the batches do not contain both biological conditions for DE analysis
batch effect
limma
rna seq
DE
updated 4.2 years ago by
Steve Lianoglou
★ 13k • written 4.2 years ago by
svlachavas
▴ 830
0
votes
3
replies
690
views
Normalization of RNA seq data
RNA seq
cpm
updated 4.2 years ago by
Kevin Blighe
★ 3.9k • written 4.2 years ago by
isabel.pieterse
• 0
3
votes
3
replies
943
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 4.6 years ago by
Leonard Goldstein
▴ 220 • written 4.6 years ago by
116100016
• 0
1
vote
4
replies
935
views
Difference between Fold Changes from EdgeR glmLRTest and directly calculated fold changes.
edger
RNA Seq
updated 4.6 years ago by
James W. MacDonald
66k • written 4.6 years ago by
abf
▴ 30
0
votes
0
replies
517
views
searching for specific RNA sequences
rna seq
4.6 years ago
adeler001
• 0
0
votes
2
replies
829
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 4.7 years ago by
Leonard Goldstein
▴ 220 • written 4.7 years ago by
116100016
• 0
0
votes
1
reply
570
views
51 views DESeq2 RNAseq differential expression analysis
deseq2
likelihood ratio
rna seq
wald test
updated 4.8 years ago by
Michael Love
42k • written 4.8 years ago by
adeler001
• 0
0
votes
2
replies
989
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 4.9 years ago by
Michael Love
42k • written 4.9 years ago by
adeler001
• 0
1
vote
5
replies
1.3k
views
Time course experiment using limma with voom
limma
voom
RNA Seq
Time-course experiments
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
mahes.muniandy
• 0
5
votes
3
replies
1.0k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq
wgcna
updated 5.1 years ago by
Peter Langfelder
★ 3.0k • written 5.1 years ago by
agustin.gonvi
▴ 20
1
vote
2
replies
2.0k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
5.2 years ago
Mozart
▴ 30
0
votes
0
replies
1.7k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2
hierarchical clustering
microarray
RNA seq
DEG
6.4 years ago
lawarde.ankita1
▴ 30
13 results • Page
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Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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