Bioconductor RNA Seq

Showing : RNA Seq • reset

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3.1k

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deseq2 mahattan plot RNA Seq

updated 4.0 years ago by bernatgel ▴ 150 • written 5.0 years ago by adeler001 • 0

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3.7k

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batch effect limma rna seq DE

updated 4.5 years ago by Steve Lianoglou ★ 13k • written 4.5 years ago by svlachavas ▴ 830

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858

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RNA seq cpm

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by isabel.pieterse • 0

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1.1k

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sgseq alternative splicing rna seq

updated 9 weeks ago by Sara • 0 • written 4.9 years ago by 116100016 • 0

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1.0k

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edger RNA Seq

updated 4.9 years ago by James W. MacDonald 67k • written 4.9 years ago by abf ▴ 30

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596

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rna seq

4.9 years ago adeler001 • 0

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922

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rna seq SGSeq Alternative splicing

updated 5.0 years ago by Leonard Goldstein ▴ 260 • written 5.0 years ago by 116100016 • 0

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638

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deseq2 likelihood ratio rna seq wald test

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by adeler001 • 0

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1.1k

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volcano plot rna seq

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by adeler001 • 0

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1.4k

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limma voom RNA Seq Time-course experiments

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by mahes.muniandy • 0

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1.2k

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RNA seq wgcna

updated 5.3 years ago by Peter Langfelder ★ 3.0k • written 5.3 years ago by agustin.gonvi ▴ 20

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2.1k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.4 years ago Mozart ▴ 30

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1.8k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.6 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …

Comment: miRTarRnaseq library by María Calvo • 0

Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…

Answer: heatmap with batch effect by James W. MacDonald 67k

You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …

Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k

``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

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Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Answer: How to control batch effect if Group and batch are same?

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Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k