Bioconductor RCy3

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igraph KEGGgraph RCy3 GraphNEL

6 months ago • updated 5 months ago Arindam ▴ 80

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RCy3

10 months ago Matthew Thornton ▴ 380

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540

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Cytoscape RCy3 RCy

updated 15 months ago by alex.pico ▴ 30 • written 15 months ago by David R ▴ 90

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Network RCy3

updated 15 months ago by alex.pico ▴ 30 • written 15 months ago by David R ▴ 90

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RCy3 Cytohubba

updated 15 months ago by alex.pico ▴ 30 • written 15 months ago by jzhan067 ▴ 10

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Cytoscape RCy3 Networkvisualization WGCNA

23 months ago • updated 22 months ago Ortega-C ▴ 10

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RCy3

updated 2.2 years ago by alex.pico ▴ 30 • written 2.2 years ago by adR ▴ 40

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GEOquery CancerData limma RCy3 CancerInSilico

updated 3.4 years ago by Steve Lianoglou ★ 13k • written 3.4 years ago by Caitlin ▴ 50

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rcy3

updated 4.3 years ago by alex.pico ▴ 30 • written 5.2 years ago by hanna226613 ▴ 10

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

4.3 years ago Emilia ▴ 40

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968

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RCy3 Cytoscape R Newick Bioconductor

updated 4.3 years ago by alex.pico ▴ 30 • written 4.7 years ago by ellisjc • 0

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RCy3 Cytoscape Rgraphviz GOstats

5.9 years ago Matthew Thornton ▴ 380

12 results • Page 1 of 1

Recent ...

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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