Bioconductor RCy3

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igraph KEGGgraph RCy3 GraphNEL

3 months ago • updated 9 weeks ago Arindam ▴ 80

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737

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RCy3

7 months ago Matthew Thornton ▴ 380

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449

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Cytoscape RCy3 RCy

updated 11 months ago by alex.pico ▴ 30 • written 12 months ago by David R ▴ 90

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Network RCy3

updated 11 months ago by alex.pico ▴ 30 • written 12 months ago by David R ▴ 90

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RCy3 Cytohubba

updated 11 months ago by alex.pico ▴ 30 • written 12 months ago by jzhan067 ▴ 10

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Cytoscape RCy3 Networkvisualization WGCNA

19 months ago Ortega-C ▴ 10

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886

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RCy3

updated 23 months ago by alex.pico ▴ 30 • written 23 months ago by adR ▴ 40

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GEOquery CancerData limma RCy3 CancerInSilico

updated 3.1 years ago by Steve Lianoglou ★ 13k • written 3.1 years ago by Caitlin ▴ 50

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rcy3

updated 4.0 years ago by alex.pico ▴ 30 • written 5.0 years ago by hanna226613 ▴ 10

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

4.0 years ago Emilia ▴ 40

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904

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RCy3 Cytoscape R Newick Bioconductor

updated 4.0 years ago by alex.pico ▴ 30 • written 4.4 years ago by ellisjc • 0

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1.6k

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RCy3 Cytoscape Rgraphviz GOstats

5.6 years ago Matthew Thornton ▴ 380

12 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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