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0
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187
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XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 11 weeks ago by 68k • written 11 weeks ago by • 0
6
votes
10
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2.8k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 3 months ago by ★ 4.8k • written 4 months ago by ▴ 10
0
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0
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264
views
[maser] Why does maser coverage filtering ignore skipping counts of an alt. splicing analysis?
rMATS alternativesplicing maser R
5 months ago Anke • 0
1
vote
1
reply
567
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 7 months ago by 68k • written 7 months ago by • 0
2
votes
3
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708
views
DeSeq2 Model Problems with species, tissue, and tissue status nesting
DESeq2 R
written 8 months ago by • 0
3
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3
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15k
views
How to fix 'long vectors not supported yet' error in R
r
updated 12 months ago by • 0 • written 6.1 years ago by • 0
0
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0
replies
391
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
13 months ago danalvoronov ▴ 10
0
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4
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865
views
limma with interaction term
R biostatistics limma Epigenetics
13 months ago Jitendra ▴ 10
0
votes
3
replies
2.2k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.1 years ago by • 0
1
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5
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2.6k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 10.1 years ago by ▴ 10
0
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7
replies
2.2k
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse R SingleCellExperiment SingleCellData
written 16 months ago by • 0
0
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0
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538
views
multipollutant models
statistics Regression r limma
16 months ago Jitendra ▴ 10
3
votes
4
replies
1.1k
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
16 months ago pl23 • 0
1
vote
3
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2.3k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 16 months ago by ▴ 750 • written 3.9 years ago by • 0
0
votes
10
replies
1.5k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
16 months ago • updated 13 months ago ScafioRuo • 0
12
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10
replies
14k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 12 months ago by • 0 • written 17 months ago by ▴ 20
0
votes
2
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995
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq HTSeq R
20 months ago • updated 19 months ago yr542 • 0
1
vote
2
replies
1.1k
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
20 months ago Miguel • 0
2
votes
5
replies
1.8k
views
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R edgeR RNASeq
20 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
829
views
Gene enrichment analysis
analysis R GOfuncR
updated 21 months ago by ▴ 760 • written 21 months ago by • 0
0
votes
2
replies
1.7k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 22 months ago by • 0 • written 4.1 years ago by • 0
0
votes
1
reply
957
views
Subtype specific differential expression analysis
R limmaGUI edgeR limma regutools
updated 23 months ago by 52k • written 23 months ago by • 0
0
votes
1
reply
754
views
DEseq2 Single cell data paired design
R
updated 23 months ago by ▴ 30 • written 23 months ago by • 0
0
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4
replies
1.5k
views
Combine RNA-seq
BatchEffect R rnaseq
updated 23 months ago by ★ 1.4k • written 23 months ago by • 0
1
vote
3
replies
1.4k
views
tximport error
tximport r
updated 23 months ago by 43k • written 23 months ago by • 0
1
vote
2
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1.4k
views
Filter by expression and keep probes in limma
R filter limma Normalization Microarray
24 months ago Abdul ▴ 20
0
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0
replies
751
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
24 months ago aymanreffai • 0
1
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1
reply
2.7k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 24 months ago by ★ 4.1k • written 24 months ago by ▴ 10
0
votes
4
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1.4k
views
Unable to install BiocManager
Biocmanager R
updated 24 months ago by ▴ 50 • written 24 months ago by • 0
1
vote
1
reply
1.9k
views
Error in h5checktype(). H5Identifier not valid.
rhdf5 rhdf r
updated 2.0 years ago by • 0 • written 2.1 years ago by • 0
0
votes
13
replies
11k
views
KEGG enrichment in R and gene IDs
KEGG enrichKEGG R entrezid
2.0 years ago Laia ▴ 10
1
vote
3
replies
7.4k
views
Reduce the number of nodes appear in the cnetplot of clusterprofiler
cnetplot R clusterProfiler
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by ▴ 10
0
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1
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1.3k
views
scRNAseq package and cell type annotations
ExperimentHub R ExperimentHubData scRNAseq SingleR
updated 2.1 years ago by ▴ 750 • written 2.1 years ago by ▴ 10
0
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0
replies
735
views
rDGIdb package: score of the results
rDGIdb r
2.1 years ago HELEN • 0
2
votes
1
reply
753
views
add column with name in R
name R column
updated 2.1 years ago by ▴ 70 • written 2.1 years ago by • 0
0
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4
replies
1.6k
views
how to extract list in quantile in R
R quantile list
2.1 years ago sat • 0
0
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0
replies
1.0k
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival TCGAbiolinks R PAAD
2.1 years ago Manav • 0
0
votes
0
replies
844
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
2.1 years ago Jitendra ▴ 10
3
votes
2
replies
1.3k
views
how to extract and match information of two filein R
R column match
2.1 years ago sat • 0
0
votes
0
replies
785
views
News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
2.1 years ago info ▴ 10
0
votes
17
replies
2.5k
views
How to check linear model
modalmatrix limma R linear
2.1 years ago Jitendra ▴ 10
0
votes
1
reply
1.1k
views
customised help function in argparse() in R
command-line R command-line-arguments argparse()
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
votes
3
replies
1.8k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 2.1 years ago by ▴ 760 • written 2.1 years ago by ▴ 10
1
vote
2
replies
1.3k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
2.1 years ago abhisek001 • 0
0
votes
4
replies
1.4k
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
2.1 years ago Dr. • 0
0
votes
1
reply
1.6k
views
Extract Intersection Values from Venn
R Venn
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
2
votes
6
replies
2.5k
views
DMRcate
DMRcate R DMRcatedata Markdown
2.1 years ago yr542 • 0
0
votes
0
replies
770
views
How to use MeDIPS with BEDPE format input?
R medip-seq MEDIPS
2.2 years ago Luomeng • 0
2
votes
9
replies
1.8k
views
mas5calls function doesn't work; mirna40cdf problem
R Bioconductor mas5calls
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
1
vote
2
replies
4.1k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 2.2 years ago by 52k • written 2.2 years ago by • 0
50 results • Page 1 of 1
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Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage by Albert • 0
great and very nice
Comment: European Bioconductor Conference 2023 planning by Pandora • 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
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I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Morse • 0
[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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