Showing : R • reset
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143
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[maser] Why does maser coverage filtering ignore skipping counts of an alt. splicing analysis?
rMATS alternativesplicing maser R
6 weeks ago Anke • 0
1
vote
1
reply
365
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 11 weeks ago by 67k • written 11 weeks ago by • 0
2
votes
3
replies
554
views
DeSeq2 Model Problems with species, tissue, and tissue status nesting
DESeq2 R
written 4 months ago by • 0
3
votes
3
replies
14k
views
How to fix 'long vectors not supported yet' error in R
r
updated 7 months ago by • 0 • written 5.8 years ago by • 0
0
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0
replies
304
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
8 months ago danalvoronov ▴ 10
0
votes
4
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683
views
limma with interaction term
R biostatistics limma Epigenetics
9 months ago • updated 8 months ago Jitendra ▴ 10
0
votes
3
replies
1.9k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.7 years ago by • 0
1
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5
replies
2.4k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.8 years ago by ▴ 10
0
votes
6
replies
1.7k
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse R SingleCellExperiment SingleCellData
updated 10 days ago by • 0 • written 11 months ago by • 0
0
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0
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459
views
multipollutant models
statistics Regression r limma
11 months ago Jitendra ▴ 10
3
votes
4
replies
922
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
12 months ago pl23 • 0
1
vote
3
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1.9k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 12 months ago by ▴ 750 • written 3.5 years ago by • 0
0
votes
10
replies
1.3k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
12 months ago • updated 8 months ago ScafioRuo • 0
12
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10
replies
12k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 8 months ago by • 0 • written 13 months ago by ▴ 20
0
votes
2
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839
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq HTSeq R
15 months ago • updated 14 months ago yr542 • 0
1
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2
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948
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
16 months ago Miguel • 0
2
votes
5
replies
1.7k
views
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R edgeR RNASeq
16 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
727
views
Gene enrichment analysis
analysis R GOfuncR
updated 17 months ago by ▴ 760 • written 17 months ago by • 0
0
votes
2
replies
1.5k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 18 months ago by • 0 • written 3.7 years ago by • 0
0
votes
1
reply
846
views
Subtype specific differential expression analysis
R limmaGUI edgeR limma regutools
updated 18 months ago by 51k • written 19 months ago by • 0
0
votes
1
reply
680
views
DEseq2 Single cell data paired design
R
updated 19 months ago by ▴ 30 • written 19 months ago by • 0
0
votes
4
replies
1.3k
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Combine RNA-seq
BatchEffect R rnaseq
updated 19 months ago by ★ 1.4k • written 19 months ago by • 0
1
vote
3
replies
1.2k
views
tximport error
tximport r
updated 19 months ago by 42k • written 19 months ago by • 0
1
vote
2
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1.2k
views
Filter by expression and keep probes in limma
R filter limma Normalization Microarray
19 months ago Abdul ▴ 20
0
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0
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667
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Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
19 months ago aymanreffai • 0
1
vote
1
reply
2.0k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 10
0
votes
4
replies
1.2k
views
Unable to install BiocManager
Biocmanager R
updated 19 months ago by ▴ 50 • written 19 months ago by • 0
1
vote
1
reply
1.7k
views
Error in h5checktype(). H5Identifier not valid.
rhdf5 rhdf r
updated 20 months ago by • 0 • written 20 months ago by • 0
0
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13
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7.6k
views
KEGG enrichment in R and gene IDs
KEGG enrichKEGG R entrezid
20 months ago Laia ▴ 10
1
vote
3
replies
5.9k
views
Reduce the number of nodes appear in the cnetplot of clusterprofiler
cnetplot R clusterProfiler
updated 20 months ago by ★ 4.1k • written 21 months ago by ▴ 10
0
votes
1
reply
1.1k
views
scRNAseq package and cell type annotations
ExperimentHub R ExperimentHubData scRNAseq SingleR
updated 20 months ago by ▴ 740 • written 20 months ago by ▴ 10
0
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0
replies
659
views
rDGIdb package: score of the results
rDGIdb r
20 months ago HELEN • 0
2
votes
1
reply
669
views
add column with name in R
name R column
updated 20 months ago by ▴ 70 • written 20 months ago by • 0
0
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4
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1.3k
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how to extract list in quantile in R
R quantile list
20 months ago sat • 0
0
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0
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856
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival TCGAbiolinks R PAAD
20 months ago Manav • 0
0
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0
replies
740
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
20 months ago Jitendra ▴ 10
3
votes
2
replies
1.1k
views
how to extract and match information of two filein R
R column match
21 months ago sat • 0
0
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0
replies
701
views
News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
21 months ago info ▴ 10
0
votes
17
replies
2.2k
views
How to check linear model
modalmatrix limma R linear
21 months ago • updated 20 months ago Jitendra ▴ 10
0
votes
1
reply
955
views
customised help function in argparse() in R
command-line R command-line-arguments argparse()
updated 21 months ago by 67k • written 21 months ago by • 0
0
votes
3
replies
1.5k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 21 months ago by ▴ 760 • written 21 months ago by ▴ 10
1
vote
2
replies
1.1k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
21 months ago abhisek001 • 0
0
votes
4
replies
1.2k
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
21 months ago Dr. • 0
0
votes
1
reply
1.3k
views
Extract Intersection Values from Venn
R Venn
updated 21 months ago by 67k • written 21 months ago by • 0
2
votes
6
replies
2.2k
views
DMRcate
DMRcate R DMRcatedata Markdown
21 months ago yr542 • 0
0
votes
0
replies
694
views
How to use MeDIPS with BEDPE format input?
R medip-seq MEDIPS
21 months ago Luomeng • 0
2
votes
9
replies
1.6k
views
mas5calls function doesn't work; mirna40cdf problem
R Bioconductor mas5calls
updated 21 months ago by 67k • written 21 months ago by • 0
1
vote
2
replies
3.1k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 21 months ago by 51k • written 22 months ago by • 0
0
votes
3
replies
1.3k
views
Error when using "readTranscriptFeatures" in "Genomation" R package for loading the bed file
readTranscriptFeatures R genomation bed
updated 22 months ago by 67k • written 22 months ago by • 0
0
votes
1
reply
824
views
Limma: how to make a table of logFC of certain genes (I need to define logFC of 62 genes specific for the cells of interest)
DifferentialExpression limma R TissueMicroarrayData
updated 22 months ago by 51k • written 22 months ago by • 0
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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