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Package
•
reset
1
vote
4
replies
1.4k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
26 days ago • updated 25 days ago
slizchap
• 0
0
votes
1
reply
219
views
DESeq use in lipidomic analysis
DESeq2
package
Lipidomics
updated 6 weeks ago by
Michael Love
43k • written 6 weeks ago by
泓宇
• 0
1
vote
4
replies
1.2k
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Manish
• 0
3
votes
2
replies
3.2k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
2.2 years ago
m-bihie
▴ 10
0
votes
3
replies
4.2k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
2.8 years ago
elmfinds
• 0
2
votes
7
replies
8.1k
views
Installing Local packages in Bioconductor
package
updated 20 months ago by
Boxun
• 0 • written 3.0 years ago by
BioC123
• 0
3
votes
3
replies
1.3k
views
Package fail to build
package
OpenStats
updated 3.0 years ago by
Hervé Pagès
16k • written 3.0 years ago by
hamedhm
• 0
0
votes
2
replies
1.3k
views
Forking a package/install from source
install
package
fork
bugfix
updated 3.0 years ago by
James W. MacDonald
68k • written 3.0 years ago by
Jeff
• 0
0
votes
3
replies
3.1k
views
More Bioconductor Package Installation Problems
package
symlinks
directories
installation
Dropbox
updated 3.1 years ago by
Hervé Pagès
16k • written 3.1 years ago by
jose
▴ 10
0
votes
1
reply
1.8k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA
package
annotation
updated 3.3 years ago by
shepherl
4.1k • written 3.3 years ago by
mathavanbioinfo
▴ 20
0
votes
6
replies
7.7k
views
installing older versions of packages
package
3.9 years ago
zuljiamel1991
▴ 10
0
votes
2
replies
1.1k
views
Confusion error from automated checks for package submission
package
submiss
Submission
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
sara.stankiewicz
• 0
1
vote
1
reply
1.4k
views
simplifyEnrichment install error
package
Rversion
Install
simplifyEnrichment
updated 4.0 years ago by
shepherl
4.1k • written 4.0 years ago by
ch_el
▴ 10
2
votes
4
replies
1.5k
views
Bioconductor package development
package
R
software
development
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
Dany
• 0
2
votes
8
replies
4.9k
views
Which R version is needed for tximport package?
tximport
package
R version
install tximport
4.7 years ago
harelarik
▴ 60
0
votes
1
reply
2.3k
views
ensembldb package installation issue
ensembldb
package
installation
BiocManager
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
dylangagler
• 0
0
votes
2
replies
977
views
New package function redistribution
package
license
C
R
5.1 years ago
adam.eleni1
• 0
3
votes
3
replies
1.8k
views
Repeated error loading DESqe2 - package xxx not found
deseq2
package
software error
updated 5.1 years ago by
Martin Morgan
25k • written 5.2 years ago by
DcL-A
• 0
0
votes
1
reply
1.3k
views
I have installed bioconductor, R still asks me to install it
bioconductor
biocLite
GEOquery
package
updated 5.3 years ago by
Steve Lianoglou
★ 13k • written 5.3 years ago by
luhan.ni
• 0
0
votes
1
reply
1.0k
views
Package not found bioconductor gCMAP
microarray
cmap
package
gCMAP
gCAMPWeb
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
bastien.chassagnol
• 0
0
votes
4
replies
1.2k
views
CDF still not found
CDF
Package
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
ekl
• 0
0
votes
1
reply
1.2k
views
Submitting R package in Bioconductor with Plink and vcftools Dependencies
R
package
dependencies
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
MAPK
• 0
1
vote
2
replies
1.1k
views
Gallus gallus package genome update release
genome
novel
package
release
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
pertille
• 0
1
vote
3
replies
1.6k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 6.5 years ago by
Wolfgang Huber
★ 13k • written 6.5 years ago by
shepherl
4.1k
0
votes
0
replies
1.2k
views
Pathview input error: non-numeric variable in data frame
pathview
kegg
pathways
package
6.6 years ago
anc.informatics
• 0
2
votes
1
reply
1.2k
views
Curated Data Package in Bioconductor
package
data
6.7 years ago
divyswar01
• 0
2
votes
3
replies
1.7k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
6.7 years ago
shepherl
4.1k
1
vote
6
replies
3.4k
views
how to create a NEWS file in R package
news
package
updated 6.8 years ago by
ahlammajid352
• 0 • written 6.8 years ago by
xyluo1991
• 0
1
vote
4
replies
5.3k
views
Unable to install BiocStyle: not available (for R version 3.5.0)
package
not available (for R version 3.5.0)
BiocStyle
updated 6.9 years ago by
Mike Smith
★ 6.6k • written 6.9 years ago by
nereidaramirez
• 0
0
votes
1
reply
1.1k
views
News:
List of Deprecated Packages for Bioc3.8
package
deprecate
release
news
News
6.9 years ago
shepherl
4.1k
1
vote
2
replies
1.3k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 6.9 years ago by
emmascottgm
• 0 • written 6.9 years ago by
rcavalca
▴ 140
0
votes
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 7.1 years ago by
shepherl
4.1k
0
votes
0
replies
1.2k
views
News:
Release Deadline: Passing R CMD build and R CMD check
package
build
build/check error
check
release
News
7.1 years ago
shepherl
4.1k
12
votes
3
replies
6.6k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
7.1 years ago
lloyd.izard
▴ 80
1
vote
5
replies
2.6k
views
Tissue Specificity R-package
tissue
specificity
r
package
package development
updated 7.2 years ago by
jaro.slamecka
▴ 140 • written 7.2 years ago by
BioinfGuru
▴ 70
0
votes
2
replies
1.8k
views
GOenrichmentAnalysis of WGCNA mocules in Zea mays
annotation
wgcna
package
7.2 years ago
j.baldauf
• 0
3
votes
2
replies
1.2k
views
Prevent "New version" message to appear
package
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
nick
▴ 10
0
votes
2
replies
2.5k
views
Creating a qPCRset object from a text file
qPCRset object
nondetects
r
package
txt
updated 18 months ago by
Nat.Nataren
• 0 • written 7.3 years ago by
s.m.may
• 0
0
votes
1
reply
1.4k
views
Error in export ifelse from IRanges
iranges
ifelse
package
namespace
export
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
dalibor.miklik
• 0
1
vote
2
replies
1.4k
views
R packages old versions
R
deseq2
package
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
minie
• 0
1
vote
1
reply
1.5k
views
Large example data with Bioconductor package
package
updated 7.5 years ago by
shepherl
4.1k • written 7.5 years ago by
Marek Gierlinski
▴ 30
1
vote
0
replies
1.1k
views
News:
Shields/Badges on Package landing pages
package
badges
shields
News
7.5 years ago
shepherl
4.1k
4
votes
7
replies
2.4k
views
Does Rhtslib currently work on Windows?
Rhtslib
htslib
package
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
Shian Su
▴ 40
1
vote
7
replies
2.3k
views
Ballgown object construction error
ballgown
scan
error
package
7.9 years ago • updated 7.8 years ago
spaque57
• 0
0
votes
1
reply
2.0k
views
Error in installing ReactomePA
R
package
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
niutster
• 0
0
votes
1
reply
1.5k
views
missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 8.1 years ago by
belinda.phipson
▴ 40 • written 8.1 years ago by
evani.radiya.dixit
• 0
0
votes
8
replies
7.3k
views
not able to install bioconductor packages
package
bioconductor
new version
8.2 years ago
farahqureshi5
• 0
0
votes
2
replies
1.3k
views
Weighted matrix from igraph to graphNEL
package
8.4 years ago
antonia91.barile
• 0
0
votes
5
replies
1.9k
views
Using S4Vectors within a package
Package
s4vectors
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
my4
▴ 10
0
votes
1
reply
1.5k
views
How to submit a package hosted on Bitbucket
package
submission
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
richierocks
▴ 40
50 results • Page
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Comment: How to convert transcript counts to gene counts in R?
by
ben
• 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open!
by
Ali
• 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets
by
Gordon Smyth
52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Comment: FlowSOM library requires igraph but igraph does not install
by
Szabolcs
• 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Kinnary
▴ 20
Thank you very much for the vis suggestion!
Votes
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
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