Showing : NA • reset
2
votes
1
reply
2.5k
views
Removing metadata rows containing NA values in GRanges
IRanges GRanges NA
updated 2.3 years ago by ★ 4.6k • written 2.3 years ago by • 0
0
votes
1
reply
1.7k
views
values (NA) in p value Deseq2 (reopen)
pvalue NA R DESeq2
updated 3.2 years ago by ★ 4.6k • written 3.2 years ago by • 0
0
votes
1
reply
1.0k
views
using qCount from the QuasR package
qCount QuasR NA
updated 4.5 years ago by ▴ 350 • written 4.5 years ago by • 0
2
votes
5
replies
4.5k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma mass spec na
updated 5.9 years ago by 52k • written 5.9 years ago by • 0
0
votes
2
replies
1.5k
views
normalizecoverage in methylkit outputs NAs
methylkit normalizecoverage NA
updated 6.3 years ago by ▴ 20 • written 6.3 years ago by ▴ 20
0
votes
8
replies
4.3k
views
DESeq2: handling NA values in colData
deseq2 coldata NA
updated 5 months ago by 43k • written 6.5 years ago by ▴ 170
0
votes
1
reply
2.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 6.9 years ago by 52k • written 7.0 years ago by • 0
0
votes
0
replies
937
views
Inconsistent Missing Values When Importing GFF3
rtracklayer NA
8.4 years ago Dario Strbenac ★ 1.5k
2
votes
4
replies
1.4k
views
ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 10
0
votes
3
replies
4.8k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2 NA cooksCutoff
updated 8.9 years ago by 43k • written 8.9 years ago by ▴ 30
2
votes
1
reply
2.0k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools lrr baf NA
updated 9.2 years ago by ▴ 890 • written 9.2 years ago by ▴ 40
1
vote
3
replies
1.6k
views
NAs values when importing BED file using import function
rtracklayer NA BED getseq
9.2 years ago Dimitris Polychronopoulos ▴ 80
0
votes
1
reply
1.8k
views
Plotting confidence intervals with NA values
graphics confidence interval NA
updated 9.3 years ago by 67k • written 9.3 years ago by ▴ 40
2
votes
2
replies
2.1k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 9.5 years ago by 67k • written 9.5 years ago by ▴ 40
0
votes
0
replies
1.7k
views
missing values in data as input for parody package
parody r NA
9.9 years ago upendrakumar.devisetty • 0
1
vote
2
replies
2.1k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.0 years ago remi.tournebize ▴ 10
3
votes
6
replies
2.5k
views
Possible bug in DEseq2 1.6.1 ?
deseq2 cook NA
updated 10.3 years ago by 43k • written 10.3 years ago by ▴ 10
12
votes
13
replies
8.6k
views
EdgeR Differential Expression analysis with NAs
EdgeR rnaseq NA
updated 10.4 years ago by ★ 28k • written 10.4 years ago by • 0
18 results • Page 1 of 1
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Comment: DESeq2 analysis with transcript counts by kahunroleh • 0
Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0
Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…
Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
Votes
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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