Bioconductor NA

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IRanges GRanges NA

updated 2.5 years ago by ATpoint ★ 4.8k • written 2.5 years ago by Timucin • 0

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pvalue NA R DESeq2

updated 3.4 years ago by ATpoint ★ 4.8k • written 3.4 years ago by Johan Largo • 0

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qCount QuasR NA

updated 4.7 years ago by Michael Stadler ▴ 350 • written 4.7 years ago by jabbar_campbell • 0

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limma mass spec na

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by reubenmcgregor88 • 0

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methylkit normalizecoverage NA

updated 6.5 years ago by altuna akalin ▴ 20 • written 6.5 years ago by GFM ▴ 20

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deseq2 coldata NA

updated 7 months ago by Michael Love 43k • written 6.7 years ago by t.kuilman ▴ 170

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edger dgelist NA egsea

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by belmore • 0

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rtracklayer NA

8.6 years ago Dario Strbenac ★ 1.6k

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reportingtools deseq2 NA pvalue

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by NMostajo ▴ 10

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deseq2 NA cooksCutoff

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by colaneri ▴ 30

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gwastools lrr baf NA

updated 9.4 years ago by Stephanie M. Gogarten ▴ 890 • written 9.4 years ago by Vinicius Henrique da Silva ▴ 40

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rtracklayer NA BED getseq

9.4 years ago Dimitris Polychronopoulos ▴ 80

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graphics confidence interval NA

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by Vinicius Henrique da Silva ▴ 40

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Gviz Plot NA graph Job

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by Vinicius Henrique da Silva ▴ 40

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parody r NA

10.1 years ago upendrakumar.devisetty • 0

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snpStats BioConductor LD Linkage Disequilibrium NA

10.1 years ago remi.tournebize ▴ 10

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deseq2 cook NA

updated 10.4 years ago by Michael Love 43k • written 10.5 years ago by skiaphrene ▴ 10

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EdgeR rnaseq NA

updated 10.5 years ago by Aaron Lun ★ 28k • written 10.5 years ago by elliott77 • 0

18 results • Page 1 of 1

Recent ...

Replies

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Votes

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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