Showing : NA • reset
2
votes
1
reply
1.9k
views
Removing metadata rows containing NA values in GRanges
IRanges GRanges NA
updated 21 months ago by ★ 4.2k • written 21 months ago by • 0
0
votes
1
reply
1.3k
views
values (NA) in p value Deseq2 (reopen)
pvalue NA R DESeq2
updated 2.6 years ago by ★ 4.2k • written 2.6 years ago by • 0
0
votes
1
reply
817
views
using qCount from the QuasR package
qCount QuasR NA
updated 3.9 years ago by ▴ 350 • written 3.9 years ago by • 0
2
votes
5
replies
3.8k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma mass spec na
updated 5.3 years ago by 51k • written 5.3 years ago by • 0
0
votes
2
replies
1.2k
views
normalizecoverage in methylkit outputs NAs
methylkit normalizecoverage NA
updated 5.7 years ago by ▴ 20 • written 5.7 years ago by ▴ 20
0
votes
6
replies
3.6k
views
DESeq2: handling NA values in colData
deseq2 coldata NA
updated 5.9 years ago by 42k • written 5.9 years ago by ▴ 170
0
votes
1
reply
2.3k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 6.4 years ago by 51k • written 6.4 years ago by • 0
0
votes
0
replies
799
views
Inconsistent Missing Values When Importing GFF3
rtracklayer NA
7.8 years ago Dario Strbenac ★ 1.5k
2
votes
4
replies
1.2k
views
ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 8.0 years ago by 42k • written 8.0 years ago by ▴ 10
0
votes
3
replies
4.6k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2 NA cooksCutoff
updated 8.3 years ago by 42k • written 8.3 years ago by ▴ 30
2
votes
1
reply
1.8k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools lrr baf NA
updated 8.6 years ago by ▴ 870 • written 8.6 years ago by ▴ 40
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer NA BED getseq
8.6 years ago Dimitris Polychronopoulos ▴ 80
0
votes
1
reply
1.6k
views
Plotting confidence intervals with NA values
graphics confidence interval NA
updated 8.7 years ago by 66k • written 8.7 years ago by ▴ 40
2
votes
2
replies
1.9k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 8.9 years ago by 66k • written 8.9 years ago by ▴ 40
0
votes
0
replies
1.6k
views
missing values in data as input for parody package
parody r NA
9.3 years ago upendrakumar.devisetty • 0
1
vote
2
replies
1.9k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.4 years ago remi.tournebize ▴ 10
3
votes
6
replies
2.3k
views
Possible bug in DEseq2 1.6.1 ?
deseq2 cook NA
updated 9.7 years ago by 42k • written 9.7 years ago by ▴ 10
12
votes
13
replies
7.9k
views
EdgeR Differential Expression analysis with NAs
EdgeR rnaseq NA
updated 9.8 years ago by ★ 28k • written 9.8 years ago by • 0
18 results • Page 1 of 1
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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results by Michael Love 42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results by V_Vibes • 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results by V_Vibes • 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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