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NA
•
reset
2
votes
1
reply
2.3k
views
Removing metadata rows containing NA values in GRanges
IRanges
GRanges
NA
updated 2.2 years ago by
ATpoint
★ 4.6k • written 2.2 years ago by
Timucin
• 0
0
votes
1
reply
1.6k
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 3.0 years ago by
ATpoint
★ 4.6k • written 3.0 years ago by
Johan Largo
• 0
0
votes
1
reply
975
views
using qCount from the QuasR package
qCount
QuasR
NA
updated 4.4 years ago by
Michael Stadler
▴ 350 • written 4.4 years ago by
jabbar_campbell
• 0
2
votes
5
replies
4.4k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma
mass spec
na
updated 5.7 years ago by
Gordon Smyth
52k • written 5.7 years ago by
reubenmcgregor88
• 0
0
votes
2
replies
1.4k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 6.1 years ago by
altuna akalin
▴ 20 • written 6.1 years ago by
GFM
▴ 20
0
votes
8
replies
4.2k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 3 months ago by
Michael Love
43k • written 6.3 years ago by
t.kuilman
▴ 170
0
votes
1
reply
2.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.8 years ago by
Gordon Smyth
52k • written 6.8 years ago by
belmore
• 0
0
votes
0
replies
915
views
Inconsistent Missing Values When Importing GFF3
rtracklayer
NA
8.2 years ago
Dario Strbenac
★ 1.5k
2
votes
4
replies
1.3k
views
ResrtingTools include pvalue NA
reportingtools
deseq2
NA
pvalue
updated 8.4 years ago by
Michael Love
43k • written 8.4 years ago by
NMostajo
▴ 10
0
votes
3
replies
4.8k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2
NA
cooksCutoff
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
colaneri
▴ 30
2
votes
1
reply
1.9k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools
lrr
baf
NA
updated 9.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 9.0 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
3
replies
1.6k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
9.0 years ago
Dimitris Polychronopoulos
▴ 80
0
votes
1
reply
1.7k
views
Plotting confidence intervals with NA values
graphics
confidence interval
NA
updated 9.2 years ago by
James W. MacDonald
67k • written 9.2 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
2
replies
2.0k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz
Plot
NA
graph
Job
updated 9.4 years ago by
James W. MacDonald
67k • written 9.4 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.7k
views
missing values in data as input for parody package
parody
r
NA
9.7 years ago
upendrakumar.devisetty
• 0
1
vote
2
replies
2.1k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats
BioConductor
LD
Linkage Disequilibrium
NA
9.8 years ago
remi.tournebize
▴ 10
3
votes
6
replies
2.4k
views
Possible bug in DEseq2 1.6.1 ?
deseq2
cook
NA
updated 10.1 years ago by
Michael Love
43k • written 10.1 years ago by
skiaphrene
▴ 10
12
votes
13
replies
8.4k
views
EdgeR Differential Expression analysis with NAs
EdgeR
rnaseq
NA
updated 10.2 years ago by
Aaron Lun
★ 28k • written 10.2 years ago by
elliott77
• 0
18 results • Page
1 of 1
Recent ...
Replies
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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