Bioconductor Mouse

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148

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annotation SingleR mouse SingleCellData scRNAseq

10 weeks ago Muhammad • 0

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828

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TFutils mouse gene convert

3.9 years ago nicocillari • 0

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2.0k

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RNAseq Affymetrix Mouse

updated 4.5 years ago by Guido Hooiveld ★ 4.1k • written 4.5 years ago by olrema • 0

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

5.4 years ago dmgatti ▴ 10

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1.4k

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deseq2 mouse rnaseq

7.4 years ago Emilie • 0

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2.1k

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Annotation mouse UNIPROT

updated 7.6 years ago by Mike Smith ★ 6.6k • written 7.6 years ago by julie.chevalier • 0

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8.1k

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human mouse ensembl annotationdbi homologue

7.9 years ago Keith Hughitt ▴ 180

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1.6k

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bead chip Annotation Mouse Lumi probeID2nuID

updated 8.8 years ago by Andy Lynch ▴ 120 • written 8.8 years ago by smt8n • 0

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biomart ensembl release82 variation mouse News

9.6 years ago Thomas Maurel ▴ 800

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3.2k

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human mouse GRCh38 biomart Ensembl News

updated 9.8 years ago by Sonali Arora ▴ 390 • written 9.8 years ago by Thomas Maurel ▴ 800

10 results • Page 1 of 1

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Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k

Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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