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Mouse
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reset
0
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758
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TFutils database
TFutils
mouse
gene
convert
3.5 years ago
nicocillari
• 0
3
votes
4
replies
1.8k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 4.1 years ago by
Guido Hooiveld
★ 4.1k • written 4.1 years ago by
olrema
• 0
1
vote
3
replies
2.6k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
5.0 years ago
dmgatti
▴ 10
0
votes
3
replies
1.3k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
7.0 years ago
Emilie
• 0
0
votes
1
reply
1.9k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 7.2 years ago by
Mike Smith
★ 6.6k • written 7.2 years ago by
julie.chevalier
• 0
6
votes
1
reply
7.0k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
7.5 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.4k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 8.4 years ago by
Andy Lynch
▴ 120 • written 8.4 years ago by
smt8n
• 0
0
votes
0
replies
1.3k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
9.2 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
3.0k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 9.4 years ago by
Sonali Arora
▴ 390 • written 9.4 years ago by
Thomas Maurel
▴ 800
9 results • Page
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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