Bioconductor Mouse

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annotation SingleR mouse SingleCellData scRNAseq

6 days ago Muhammad • 0

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795

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TFutils mouse gene convert

3.7 years ago nicocillari • 0

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1.9k

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RNAseq Affymetrix Mouse

updated 4.4 years ago by Guido Hooiveld ★ 4.1k • written 4.4 years ago by olrema • 0

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2.7k

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

5.2 years ago dmgatti ▴ 10

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1.4k

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deseq2 mouse rnaseq

7.2 years ago Emilie • 0

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2.0k

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Annotation mouse UNIPROT

updated 7.4 years ago by Mike Smith ★ 6.6k • written 7.4 years ago by julie.chevalier • 0

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7.5k

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human mouse ensembl annotationdbi homologue

7.7 years ago Keith Hughitt ▴ 180

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1.5k

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bead chip Annotation Mouse Lumi probeID2nuID

updated 8.6 years ago by Andy Lynch ▴ 120 • written 8.6 years ago by smt8n • 0

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1.3k

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biomart ensembl release82 variation mouse News

9.4 years ago Thomas Maurel ▴ 800

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human mouse GRCh38 biomart Ensembl News

updated 9.6 years ago by Sonali Arora ▴ 390 • written 9.6 years ago by Thomas Maurel ▴ 800

10 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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Popular Question to Mark Dunning ★ 1.1k