Showing : Microarray • reset
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8
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963
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Combining RNAseq and microarray data using edgeR/limma-voom
limma voom RNASeq edgeR Microarray
written 16 days ago by • 0
1
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5
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2.4k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.8 years ago by ▴ 10
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4
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4.0k
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How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 24 months ago by • 0
2
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2
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3.4k
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Biostatistician Position: UMass Medical School
Microarray Microarray
written 17.4 years ago by ▴ 190
0
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2
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961
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Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray Alignment Biostrings
written 19 months ago by ▴ 70
1
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2
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1.2k
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Filter by expression and keep probes in limma
R filter limma Normalization Microarray
19 months ago Abdul ▴ 20
2
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2
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883
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Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
19 months ago Abdul ▴ 20
0
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2
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948
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Full list of differential genes not obtained in topTable
Microarray GEOquery topTable limma
updated 19 months ago by 51k • written 19 months ago by • 0
1
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6
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2.3k
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can negative value microarray matrix data analysed by limma directly
limma microarray normalization
updated 15 months ago by 51k • written 4.2 years ago by ▴ 20
2
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2
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921
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Question about avereps function of limma
avereps probes average limma Microarray
updated 20 months ago by 51k • written 20 months ago by ▴ 10
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0
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837
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
21 months ago agamemnon • 0
0
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1
reply
832
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Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 21 months ago by 67k • written 21 months ago by • 0
0
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2
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1.2k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
22 months ago dqt • 0
0
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2
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895
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Celfiles not reading in
Microarray
written 23 months ago by • 0
3
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2
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7.3k
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How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 23 months ago by ▴ 200 • written 6.9 years ago by • 0
6
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6
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1.7k
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Too many differentially expressed miRNA with limma
limma miRNA Microarray
24 months ago Sara ▴ 20
0
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17
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2.9k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 21 months ago by 51k • written 2.1 years ago by • 0
0
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1
reply
880
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.4 years ago by 51k • written 2.4 years ago by • 0
0
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8
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1.8k
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Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.4 years ago YC • 0
2
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13
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5.0k
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Error in using r
microarray
updated 2.4 years ago by • 0 • written 8.1 years ago by • 0
0
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4
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1.2k
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Thoughts on how to model gene expression data from two groups in a clinical trial
Microarray DifferentialExpression
2.5 years ago S • 0
1
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2
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1.0k
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Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.5 years ago Mikołaj Mierzejewski • 0
1
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2
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1.4k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.5 years ago Mikołaj Mierzejewski • 0
4
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10
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2.3k
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Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
2.5 years ago Yang Shi ▴ 10
3
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4
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2.1k
views
Quantile Normalization after rma or not?
limma Microarray oligo
2.5 years ago Yang Shi ▴ 10
2
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2
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1.0k
views
Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
hta20transcriptcluster.db Microarray oligo
2.5 years ago Yang Shi ▴ 10
2
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5
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2.5k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi Microarray
2.5 years ago nhaus ▴ 70
0
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2
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960
views
Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.6 years ago • updated 2.5 years ago amir.rakhimov.b • 0
1
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2
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1.6k
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Time course experiment using limma
limma Multi-levelExperiments Microarray
2.6 years ago Wendy ▴ 10
0
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12
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1.9k
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Annotating featureData to an affymetrix Xcel microarray
Microarray
2.6 years ago Adam • 0
0
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0
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793
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Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.7 years ago emily • 0
1
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7
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8.7k
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Oligo RMA normalization : ERROR; return code from pthread_create() is 22
microarray normalization oligo HTA
updated 2.7 years ago by • 0 • written 5.8 years ago by ▴ 10
2
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5
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2.2k
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Adjust for base line gene expression in limma model
limma Microarray
updated 2.9 years ago by 51k • written 2.9 years ago by • 0
4
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6
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1.5k
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RMA on different disease labels
rma background microarray normalization
updated 3.0 years ago by 67k • written 3.1 years ago by • 0
1
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1
reply
1.4k
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Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 3.2 years ago by 67k • written 3.2 years ago by ▴ 50
5
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2
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2.9k
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Query regarding the use of eBayes + topTable and treat + topTreat
Microarray limma DifferentialExpression
updated 2.2 years ago by 51k • written 3.3 years ago by ▴ 10
0
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1
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1.3k
views
Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 3.3 years ago by ▴ 80 • written 3.4 years ago by ▴ 10
3
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5
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2.0k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.4 years ago by 51k • written 3.5 years ago by • 0
1
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1
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1.7k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
1
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2
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1.7k
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RUV4 for microarrays
RUV4 RUV Microarray
3.6 years ago • updated 3.5 years ago Antonio • 0
0
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2
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2.3k
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How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.6 years ago waiyin0923 • 0
0
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1
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1.1k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
1
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2
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1.5k
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How to quantile normalize arraystar lncRNA microarray data?
limma Microarray
3.6 years ago a.deb • 0
3
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3
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1.6k
views
Weird MAplot with DEGs lying along the diagonals
limma Microarray AgilentChip MA-plot Normalization
3.7 years ago FedeXandeR • 0
0
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2
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1.9k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.8 years ago • updated 3.7 years ago jpwl2 • 0
8
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4
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1.5k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.8 years ago snijesh ▴ 200
1
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2
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1.6k
views
How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions 3factors limma Microarray
3.8 years ago Dan ▴ 20
3
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9
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1.7k
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limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.8 years ago Daniel.Schnell • 0
0
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1
reply
1.4k
views
Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.8 years ago by 51k • written 16.0 years ago by ▴ 10
5
votes
8
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2.9k
views
how to annotate arrays
affy annotation microarray oligo
updated 4.0 years ago by 67k • written 9.3 years ago by • 0
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
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