Showing : Microarray • reset
1
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8
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Combining RNAseq and microarray data using edgeR/limma-voom
limma voom RNASeq edgeR Microarray
written 8 weeks ago by • 0
1
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5
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2.5k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.9 years ago by ▴ 10
1
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4
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4.3k
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How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 2.1 years ago by • 0
2
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2
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3.5k
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Biostatistician Position: UMass Medical School
Microarray Microarray
written 17.5 years ago by ▴ 190
0
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2
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998
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Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray Alignment Biostrings
written 20 months ago by ▴ 70
1
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2
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1.3k
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Filter by expression and keep probes in limma
R filter limma Normalization Microarray
20 months ago Abdul ▴ 20
2
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2
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901
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Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
21 months ago Abdul ▴ 20
0
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2
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977
views
Full list of differential genes not obtained in topTable
Microarray GEOquery topTable limma
updated 21 months ago by 52k • written 21 months ago by • 0
1
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6
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2.4k
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can negative value microarray matrix data analysed by limma directly
limma microarray normalization
updated 16 months ago by 52k • written 4.3 years ago by ▴ 20
2
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2
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970
views
Question about avereps function of limma
avereps probes average limma Microarray
updated 22 months ago by 52k • written 22 months ago by ▴ 10
0
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0
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851
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
22 months ago agamemnon • 0
0
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1
reply
857
views
Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 23 months ago by 67k • written 23 months ago by • 0
0
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2
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1.3k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
24 months ago dqt • 0
0
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2
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917
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Celfiles not reading in
Microarray
written 2.0 years ago by • 0
3
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2
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7.5k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.1 years ago by ▴ 200 • written 7.1 years ago by • 0
6
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6
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1.8k
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Too many differentially expressed miRNA with limma
limma miRNA Microarray
2.1 years ago Sara ▴ 20
0
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17
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3.0k
views
Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 23 months ago by 52k • written 2.2 years ago by • 0
0
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1
reply
905
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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.5 years ago by 52k • written 2.5 years ago by • 0
0
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8
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1.8k
views
Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.5 years ago YC • 0
2
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13
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5.1k
views
Error in using r
microarray
updated 2.6 years ago by • 0 • written 8.2 years ago by • 0
0
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4
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1.3k
views
Thoughts on how to model gene expression data from two groups in a clinical trial
Microarray DifferentialExpression
2.6 years ago S • 0
1
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2
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1.0k
views
Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.6 years ago Mikołaj Mierzejewski • 0
1
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2
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1.4k
views
Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.6 years ago Mikołaj Mierzejewski • 0
4
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10
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2.3k
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Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
2.6 years ago Yang Shi ▴ 10
3
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4
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2.2k
views
Quantile Normalization after rma or not?
limma Microarray oligo
2.6 years ago Yang Shi ▴ 10
2
votes
2
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1.1k
views
Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
hta20transcriptcluster.db Microarray oligo
2.6 years ago Yang Shi ▴ 10
2
votes
5
replies
2.7k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi Microarray
2.6 years ago nhaus ▴ 70
0
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2
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986
views
Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.7 years ago amir.rakhimov.b • 0
1
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2
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1.7k
views
Time course experiment using limma
limma Multi-levelExperiments Microarray
2.7 years ago Wendy ▴ 10
0
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12
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1.9k
views
Annotating featureData to an affymetrix Xcel microarray
Microarray
2.7 years ago Adam • 0
0
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0
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817
views
Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.8 years ago emily • 0
1
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7
replies
8.9k
views
Oligo RMA normalization : ERROR; return code from pthread_create() is 22
microarray normalization oligo HTA
updated 2.8 years ago by • 0 • written 5.9 years ago by ▴ 10
2
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5
replies
2.2k
views
Adjust for base line gene expression in limma model
limma Microarray
updated 3.0 years ago by 52k • written 3.0 years ago by • 0
4
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6
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1.5k
views
RMA on different disease labels
rma background microarray normalization
updated 3.2 years ago by 67k • written 3.2 years ago by • 0
1
vote
1
reply
1.4k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 3.3 years ago by 67k • written 3.3 years ago by ▴ 50
5
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2
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3.0k
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Query regarding the use of eBayes + topTable and treat + topTreat
Microarray limma DifferentialExpression
updated 2.4 years ago by 52k • written 3.4 years ago by ▴ 10
0
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1
reply
1.4k
views
Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 3.5 years ago by ▴ 80 • written 3.5 years ago by ▴ 10
3
votes
5
replies
2.0k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.5 years ago by 52k • written 3.6 years ago by • 0
1
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1
reply
1.7k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by • 0
1
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2
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1.7k
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RUV4 for microarrays
RUV4 RUV Microarray
3.7 years ago Antonio • 0
0
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2
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2.4k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.7 years ago waiyin0923 • 0
0
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1
reply
1.1k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 3.7 years ago by ★ 4.1k • written 3.7 years ago by • 0
1
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2
replies
1.6k
views
How to quantile normalize arraystar lncRNA microarray data?
limma Microarray
3.8 years ago • updated 3.7 years ago a.deb • 0
3
votes
3
replies
1.6k
views
Weird MAplot with DEGs lying along the diagonals
limma Microarray AgilentChip MA-plot Normalization
3.8 years ago FedeXandeR • 0
0
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2
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2.0k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.9 years ago jpwl2 • 0
8
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4
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1.5k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.9 years ago snijesh ▴ 200
1
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2
replies
1.6k
views
How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions 3factors limma Microarray
3.9 years ago Dan ▴ 20
3
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9
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1.7k
views
limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.9 years ago Daniel.Schnell • 0
0
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1
reply
1.5k
views
Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.9 years ago by 52k • written 16.1 years ago by ▴ 10
5
votes
8
replies
3.0k
views
how to annotate arrays
affy annotation microarray oligo
updated 4.1 years ago by 67k • written 9.4 years ago by • 0
50 results • Page 1 of 1
Recent ...
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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