Showing : MethylationArray • reset
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49
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
7 days ago user_bioinfo • 0
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214
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
7 weeks ago charlie.wright • 0
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200
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 9 weeks ago by 68k • written 10 weeks ago by • 0
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2
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401
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Epic v2 Annotation CpG_maf source?
MethylationArray methy EPICv2manifest
4 months ago Meghan • 0
2
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1
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494
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Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjusting for Covariates?
MethylationArray EpigeneticsWorkflow limma Regression
updated 6 months ago by 68k • written 6 months ago by ▴ 10
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2
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786
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In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
6 months ago ramiro.barrantes ▴ 10
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1
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456
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 months ago by 68k • written 6 months ago by ▴ 10
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1
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561
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Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 7 months ago by 68k • written 7 months ago by • 0
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3
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641
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Open Sesame: in what genes are my differentially methylated probes!!
MethylationArray sesameData sesame
updated 4 months ago by • 0 • written 7 months ago by ▴ 10
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2
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728
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save.rnb.set warnings when trying to save rnb.set
RnBeads RnBeads.hg19 MethylationArray
written 8 months ago by • 0
0
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1
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684
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 4 months ago by • 0 • written 8 months ago by • 0
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2
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1.5k
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Batch effect correction: methylome data
sesame BatchEffect MethylationArray
updated 10 months ago by ▴ 20 • written 10 months ago by • 0
3
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2
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895
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limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 10 months ago by 52k • written 11 months ago by • 0
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2
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1.8k
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Get genomic coordinates of CpGs sites (chromosomes, genomic position)
GenomeWideAssociation SequenceAnnotation MethylationArray GenomicDistributionsData
11 months ago Yveto • 0
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0
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475
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
13 months ago • updated 12 months ago Giovanni Calice ▴ 160
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3
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1.8k
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Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
13 months ago • updated 6 months ago s.malik • 0
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11
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1.4k
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Strange logFC values in differential methylation site anslysis
edgeR MethylationArray
updated 13 months ago by 52k • written 13 months ago by • 0
1
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7
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1.3k
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Library size normalization in methylation count analysis
edgeR MethylationArray
updated 5 months ago by • 0 • written 13 months ago by • 0
1
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1
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1.4k
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 13 months ago by 68k • written 13 months ago by • 0
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7
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1.1k
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error in reading idat files and creating rgset
minfi MethylationArray
updated 13 months ago by 68k • written 13 months ago by • 0
1
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2
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873
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How to get normalized values for methylation counts in edgeR
edgeR MethylationArray
14 months ago mico • 0
1
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4
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1.3k
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
14 months ago mikat • 0
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1
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1.2k
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 18 months ago by 68k • written 18 months ago by • 0
5
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5
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1.3k
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limma output for epic array methylation data
linearregression epicarray MethylationArray limma
19 months ago Jitendra ▴ 10
1
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1
reply
873
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 23 months ago by ▴ 40 • written 23 months ago by • 0
2
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6
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1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 23 months ago by ▴ 230 • written 23 months ago by • 0
0
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1
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874
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.0 years ago by 52k • written 2.0 years ago by • 0
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4
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1.6k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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5
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2.0k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.1 years ago by • 0
2
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1
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925
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Limma model orientation
limma methylation MethylationArray
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
2
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2
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1.7k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
3.0 years ago fluentin44 • 0
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0
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1.2k
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Surrogate variable, celltype composition correction and overfitting in DNA methylation data
sva limma methylation MethylationArray
4.2 years ago epibio ▴ 10
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6
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2.1k
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Limma Paired Analysis - Force intercept to 0
MethylationArray limma
4.2 years ago MoltenLight ▴ 10
2
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7
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3.3k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 17 months ago by • 0 • written 4.3 years ago by ▴ 20
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0
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803
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.4 years ago coobzie • 0
35 results • Page 1 of 1
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Comment: Co-occurrence Network Analysis between Algae and Bacteria by solarsunyy • 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object by chillykean • 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
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