Showing : MethylationArray • reset
2
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Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjusting for Covariates?
MethylationArray EpigeneticsWorkflow limma Regression
updated 9 weeks ago by 67k • written 9 weeks ago by ▴ 10
1
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2
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443
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In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
10 weeks ago • updated 9 weeks ago ramiro.barrantes ▴ 10
0
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1
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259
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 10 weeks ago by 67k • written 10 weeks ago by ▴ 10
1
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1
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365
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Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 11 weeks ago by 67k • written 11 weeks ago by • 0
0
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2
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392
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Open Sesame: in what genes are my differentially methylated probes!!
MethylationArray sesameData sesame
12 weeks ago ramiro.barrantes ▴ 10
0
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2
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554
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save.rnb.set warnings when trying to save rnb.set
RnBeads RnBeads.hg19 MethylationArray
written 4 months ago by • 0
0
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0
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390
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
4 months ago Mathu • 0
0
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2
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882
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Batch effect correction: methylome data
sesame BatchEffect MethylationArray
updated 6 months ago by ▴ 20 • written 6 months ago by • 0
3
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2
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757
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limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 5 months ago by 51k • written 6 months ago by • 0
1
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2
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1.1k
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Get genomic coordinates of CpGs sites (chromosomes, genomic position)
GenomeWideAssociation SequenceAnnotation MethylationArray GenomicDistributionsData
6 months ago Yveto • 0
0
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0
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375
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
8 months ago Giovanni Calice ▴ 160
1
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3
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1.4k
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Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
8 months ago • updated 8 weeks ago s.malik • 0
0
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11
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1.2k
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Strange logFC values in differential methylation site anslysis
edgeR MethylationArray
updated 8 months ago by 51k • written 8 months ago by • 0
1
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7
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1.0k
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Library size normalization in methylation count analysis
edgeR MethylationArray
updated 28 days ago by • 0 • written 8 months ago by • 0
1
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1
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962
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 9 months ago by 67k • written 9 months ago by • 0
0
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7
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875
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error in reading idat files and creating rgset
minfi MethylationArray
updated 9 months ago by 67k • written 9 months ago by • 0
1
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2
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705
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How to get normalized values for methylation counts in edgeR
edgeR MethylationArray
9 months ago mico • 0
1
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4
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975
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
9 months ago mikat • 0
0
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1
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1.0k
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 13 months ago by 67k • written 13 months ago by • 0
5
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5
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1.1k
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limma output for epic array methylation data
linearregression epicarray MethylationArray limma
15 months ago Jitendra ▴ 10
1
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1
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764
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 18 months ago by ▴ 40 • written 18 months ago by • 0
2
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6
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1.4k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 19 months ago by ▴ 200 • written 19 months ago by • 0
0
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1
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723
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 19 months ago by 51k • written 20 months ago by • 0
0
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4
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1.4k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 20 months ago by 67k • written 20 months ago by • 0
0
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5
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1.7k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 20 months ago by • 0
2
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1
reply
830
views
Limma model orientation
limma methylation MethylationArray
updated 2.5 years ago by 67k • written 2.6 years ago by • 0
2
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2
replies
1.5k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
2.6 years ago fluentin44 • 0
0
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0
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1.1k
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Surrogate variable, celltype composition correction and overfitting in DNA methylation data
sva limma methylation MethylationArray
3.8 years ago epibio ▴ 10
6
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6
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1.9k
views
Limma Paired Analysis - Force intercept to 0
MethylationArray limma
3.9 years ago • updated 3.8 years ago MoltenLight ▴ 10
2
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7
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3.0k
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Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 13 months ago by • 0 • written 3.9 years ago by ▴ 20
0
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0
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735
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.0 years ago coobzie • 0
31 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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