Showing : Metabolomics • reset
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XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 11 weeks ago by 68k • written 12 weeks ago by • 0
1
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3
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858
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 5 months ago by 68k • written 5 months ago by • 0
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1
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593
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News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 6 months ago by • 0 • written 6 months ago by ▴ 10
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2
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497
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Student
metaboliteIDmapping Metabolomics KEGG
updated 6 months ago by ▴ 60 • written 6 months ago by • 0
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383
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News: Metabolomics with R/Bioconductor Online Course
metabomxtr MetaboCoreUtils metabolomicsWorkbenchR Metabolomics
6 months ago info ▴ 10
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462
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
9 months ago devarti.mahakalkar • 0
0
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535
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Gene-by-sample covariates in limma
Metabolomics limma
updated 11 months ago by 52k • written 11 months ago by • 0
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1
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2.0k
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How to make OPLS-DA variable importance plot
crlmm ropls Metabolomics
updated 21 months ago by 68k • written 21 months ago by • 0
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1
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835
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 2.2 years ago by • 0 • written 2.5 years ago by ▴ 10
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951
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limma on spectral data
limma Metabolomics DifferentialExpression POMA
updated 2.2 years ago by 52k • written 2.2 years ago by • 0
0
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1
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934
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What does it mean when the permI set to different values give the same result
Metabolomics ropls
updated 2.3 years ago by ▴ 40 • written 2.3 years ago by • 0
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2
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1.1k
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Error received in ropls package
Metabolomics ropls
updated 2.4 years ago by ▴ 40 • written 2.4 years ago by • 0
0
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2
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1.3k
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OPLS-DA: confidence interval for accuracy metric
Metabolomics
2.7 years ago • updated 2.6 years ago Eddie • 0
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0
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671
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Negative Q2Y
Metabolomics
2.7 years ago Eddie • 0
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0
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872
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Plot of variable importance
Metabolomics
2.7 years ago Eddie • 0
0
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1
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1.0k
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Code for the Q2Ys from permutation test
Metabolomics
updated 2.8 years ago by ▴ 40 • written 2.8 years ago by • 0
16
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12
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3.4k
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VST transformation (DESeq2) for metabolomics data
vst Metabolomics DESeq2
3.0 years ago • updated 2.9 years ago Joan Miró ▴ 80
0
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5
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2.4k
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ROC plot for OPLS-DA
Metabolomics
updated 2.8 years ago by ▴ 40 • written 3.0 years ago by • 0
0
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4
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3.3k
views
OPLS-DA: values of pR2Y and pR2Q
Metabolomics
3.1 years ago • updated 2.8 years ago Eddie • 0
0
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1
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1.8k
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OPLS-DA permutation test
Metabolomics
updated 3.0 years ago by ▴ 40 • written 3.0 years ago by • 0
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1
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1.2k
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OPLS-DA for paired samples
Metabolomics
updated 3.0 years ago by ▴ 40 • written 3.1 years ago by • 0
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2
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1.1k
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variableMetadata for metabolites dataset
Metabolomics
updated 3.0 years ago by • 0 • written 3.1 years ago by • 0
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909
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Job: Director of Metabolomics, University of Illinois Urbana-Champaign
Metabolomics
3.0 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.8k
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Permutation test for OPLS-DA
Metabolomics
updated 3.0 years ago by ▴ 40 • written 3.1 years ago by • 0
0
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1
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2.1k
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR PLS OPLS Metabolomics ropls
updated 3.7 years ago by ▴ 40 • written 3.7 years ago by • 0
1
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0
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2.2k
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Normalization of metabolomics/lipidomics data for limma
Lipidomics Metabolomics limma Normalization
3.8 years ago pgugger ▴ 70
0
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1
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937
views
compute molecular mass from chemical formula
Metabolomics
written 3.9 years ago by ▴ 10
1
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2
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1.6k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
4.3 years ago Oliver • 0
3
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1
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3.1k
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
written 4.5 years ago by ★ 2.1k
2
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0
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1.1k
views
Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
4.6 years ago Johannes Rainer ★ 2.1k
0
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4
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1.2k
views
ProFIA package error for noise estimation
software error proFIA HRMS FIA Metabolomics
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by • 0
1
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0
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1.1k
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics lipidomics clinical research data integration biostatistics Job
5.2 years ago Tommi Suvitaival ▴ 10
0
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5
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1.7k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 5.6 years ago by 1.6k • written 5.6 years ago by • 0
0
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0
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1.0k
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How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
6.0 years ago Wuschel ▴ 10
0
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0
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1.3k
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Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
6.1 years ago Johannes Rainer ★ 2.1k
0
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0
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1.6k
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Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 6.2 years ago by • 0 • written 6.4 years ago by ★ 2.1k
0
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0
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1.4k
views
'names' attribute must be the same length as the vector - PAPi problems
PAPi metabolomics pathway analysis raphael
6.7 years ago maryke.wijma • 0
0
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1
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1.8k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 7.0 years ago by ★ 2.1k • written 7.0 years ago by • 0
0
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0
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1.3k
views
Job: Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
Basel switzerland RNAseq metabolomics Job
7.0 years ago Robert Ivanek ▴ 750
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0
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1.3k
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CAMERA error - isotopeProportionFits
camera metabolomics
7.2 years ago bhgyu ▴ 30
1
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2
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1.8k
views
Package won't recognise raw data files
camera metabolomics r
7.4 years ago bhgyu ▴ 30
5
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7
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2.8k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 7.5 years ago by ★ 2.1k • written 7.5 years ago by ▴ 30
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1
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1.3k
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MAIT or Specmine
metabolomics mait specmine mass spectrometry
7.5 years ago bhgyu ▴ 30
3
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3
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2.6k
views
installing xcms and faahKO package
metabolomics
updated 7.5 years ago by 1.6k • written 7.5 years ago by ▴ 10
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2
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2.0k
views
Extracting subclusters from original data
complexheatmap metabolomics
updated 7.7 years ago by ▴ 130 • written 7.7 years ago by • 0
3
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2
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3.9k
views
limma for metabolite data
limma metabolomics limma paired analysis
updated 3.4 years ago by • 0 • written 8.0 years ago by • 0
4
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7
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2.3k
views
Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi metabolomics pathway analysis
updated 8.1 years ago by ▴ 10 • written 9.0 years ago by ▴ 10
0
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1
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1.6k
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
0
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1
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1.8k
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 8.9 years ago by ▴ 20 • written 8.9 years ago by • 0
0
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6
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3.2k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
9.0 years ago dfrtyu • 0
50 results • Page 1 of 1
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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k
I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…
Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k
If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k
If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…
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Limma outputs different results for same sample?
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
Comment: DESeq - help with pair wise comparisons
Answer: Is random access by row index possible for an indexed VCF file?
Answer: Is random access by row index possible for an indexed VCF file?
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