Showing : Heatmaps • reset
0
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3
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383
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Label specific rows in pheatmap
heatmaps pheatmap
updated 5 weeks ago by 67k • written 5 weeks ago by ▴ 50
1
vote
5
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987
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 3 months ago by • 0
2
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1
reply
476
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 3 months ago by ★ 4.5k • written 3 months ago by • 0
0
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0
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222
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Error in drawHeatmap function
GeneOverlap heatmaps
5 months ago Johanna • 0
0
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2
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621
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 6 months ago by 67k • written 6 months ago by • 0
0
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1
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1.5k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 13 months ago by ▴ 780 • written 13 months ago by • 0
0
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1
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1.7k
views
edgeR heatmap construction and interpretation
heatmaps
updated 13 months ago by 51k • written 13 months ago by • 0
0
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3
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934
views
Installing Gpart
gpart heat heatmaps
updated 13 months ago by 67k • written 13 months ago by • 0
0
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2
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938
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Drawing a heatmap with only limited genes
heatmaps
updated 17 months ago by • 0 • written 17 months ago by • 0
1
vote
1
reply
684
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 20 months ago by ▴ 80 • written 20 months ago by ▴ 10
0
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1
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860
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 20 months ago by ★ 4.5k • written 21 months ago by • 0
0
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2
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1.2k
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
21 months ago shuangshuang • 0
0
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0
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1.1k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
21 months ago gianni.drm • 0
0
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1
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858
views
struggling to create a heatmap
DESeq2 heatmaps
updated 22 months ago by ★ 4.5k • written 22 months ago by ▴ 10
2
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3
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1.4k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 22 months ago by ▴ 40 • written 22 months ago by ▴ 10
2
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2
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862
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
22 months ago Sooni ▴ 10
4
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5
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4.7k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 21 months ago by 51k • written 23 months ago by ▴ 10
2
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5
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2.1k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
23 months ago Katharina • 0
0
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1
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3.2k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.1 years ago by 43k • written 2.1 years ago by • 0
0
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3
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1.6k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
0
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1
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1.9k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.2 years ago by ▴ 290 • written 2.3 years ago by • 0
1
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1
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1.3k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.4 years ago by 67k • written 2.4 years ago by • 0
0
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2
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5.4k
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Scaling for p.heatmap
heatmaps pheatmap scaling
2.4 years ago Bhavana • 0
0
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3
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1.6k
views
Persisting error in making a heatmap
heatmaps gplots
2.4 years ago beslinail • 0
1
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1
reply
978
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
0
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1
reply
1.4k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.2 years ago by ▴ 40 • written 3.2 years ago by • 0
0
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2
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2.0k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.4 years ago Clara ▴ 10
0
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1
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2.9k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by ▴ 10
1
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1
reply
1.0k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.7 years ago by 43k • written 3.7 years ago by ▴ 30
4
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5
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1.6k
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DEseq2 results
heatmaps DEGs PCA
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
0
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0
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864
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.7 years ago by 67k • written 5.7 years ago by ▴ 10
31 results • Page 1 of 1
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Answer: bioconductor packages on bioconda by James W. MacDonald 67k
The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.
Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k
The default for `plotKaryotype` is to use hg19.
Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20
saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.
Comment: Create Illmina bead summary data by Liu • 0
Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …
Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k
Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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