Showing : Heatmaps • reset
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DESeq2 Heatmap
heatmaps
updated 11 weeks ago by ★ 1.4k • written 11 weeks ago by • 0
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3
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854
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Label specific rows in pheatmap
heatmaps pheatmap
updated 5 months ago by 68k • written 5 months ago by ▴ 50
1
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5
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1.6k
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Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 7 months ago by • 0
2
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1
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1.1k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 7 months ago by ★ 4.8k • written 7 months ago by • 0
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302
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Error in drawHeatmap function
GeneOverlap heatmaps
9 months ago Johanna • 0
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2
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965
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 10 months ago by 68k • written 10 months ago by • 0
0
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2.1k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 17 months ago by ▴ 780 • written 17 months ago by • 0
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2.3k
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edgeR heatmap construction and interpretation
heatmaps
updated 17 months ago by 52k • written 17 months ago by • 0
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3
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1.1k
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Installing Gpart
gpart heat heatmaps
updated 18 months ago by 68k • written 18 months ago by • 0
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2
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1.1k
views
Drawing a heatmap with only limited genes
heatmaps
updated 21 months ago by • 0 • written 21 months ago by • 0
1
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1
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775
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.0 years ago by ▴ 80 • written 2.1 years ago by ▴ 10
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1
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975
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by • 0
0
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2
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1.5k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.1 years ago shuangshuang • 0
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0
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1.3k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.2 years ago gianni.drm • 0
0
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1
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1.1k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.2 years ago by ★ 4.8k • written 2.2 years ago by ▴ 10
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3
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1.7k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.2 years ago by ▴ 40 • written 2.2 years ago by ▴ 10
2
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2
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1.0k
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.2 years ago Sooni ▴ 10
4
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5
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5.7k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.2 years ago by 52k • written 2.3 years ago by ▴ 10
2
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5
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2.3k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.3 years ago Katharina • 0
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1
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3.8k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
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3
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1.9k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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1
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2.2k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.6 years ago by ▴ 290 • written 2.6 years ago by • 0
1
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1
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1.4k
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How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
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2
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7.0k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.8 years ago Bhavana • 0
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3
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1.8k
views
Persisting error in making a heatmap
heatmaps gplots
2.8 years ago beslinail • 0
1
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1
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1.1k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
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1
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1.5k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.6 years ago by ▴ 40 • written 3.6 years ago by • 0
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2
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2.1k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.8 years ago Clara ▴ 10
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1
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3.2k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by ▴ 10
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1
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1.2k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 30
4
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5
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1.8k
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DEseq2 results
heatmaps DEGs PCA
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by • 0
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0
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920
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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