Showing : Heatmaps • reset
0
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DESeq2 Heatmap
heatmaps
updated 6 weeks ago by ★ 1.4k • written 6 weeks ago by • 0
0
votes
3
replies
668
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 4 months ago by 68k • written 4 months ago by ▴ 50
1
vote
5
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1.5k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 6 months ago by • 0
2
votes
1
reply
871
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 6 months ago by ★ 4.7k • written 6 months ago by • 0
0
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0
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283
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Error in drawHeatmap function
GeneOverlap heatmaps
8 months ago Johanna • 0
0
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2
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853
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
1
reply
1.9k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 16 months ago by ▴ 780 • written 16 months ago by • 0
0
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1
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2.1k
views
edgeR heatmap construction and interpretation
heatmaps
updated 16 months ago by 52k • written 16 months ago by • 0
0
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3
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1.0k
views
Installing Gpart
gpart heat heatmaps
updated 16 months ago by 68k • written 16 months ago by • 0
0
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2
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1.0k
views
Drawing a heatmap with only limited genes
heatmaps
updated 20 months ago by • 0 • written 20 months ago by • 0
1
vote
1
reply
750
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 23 months ago by ▴ 80 • written 23 months ago by ▴ 10
0
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1
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942
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 24 months ago by ★ 4.7k • written 24 months ago by • 0
0
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2
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1.4k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
24 months ago shuangshuang • 0
0
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0
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1.3k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.1 years ago gianni.drm • 0
0
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1
reply
995
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.1 years ago by ★ 4.7k • written 2.1 years ago by ▴ 10
2
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3
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1.6k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by ▴ 10
2
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2
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966
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.1 years ago Sooni ▴ 10
4
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5
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5.4k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.1 years ago by 52k • written 2.2 years ago by ▴ 10
2
votes
5
replies
2.3k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.2 years ago Katharina • 0
0
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1
reply
3.6k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.4 years ago by 43k • written 2.4 years ago by • 0
0
votes
3
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1.8k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
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1
reply
2.1k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.5 years ago by ▴ 290 • written 2.5 years ago by • 0
1
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1
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1.4k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
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2
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6.4k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.7 years ago Bhavana • 0
0
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3
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1.7k
views
Persisting error in making a heatmap
heatmaps gplots
2.7 years ago beslinail • 0
1
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1
reply
1.1k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
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1
reply
1.5k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.5 years ago by ▴ 40 • written 3.5 years ago by • 0
0
votes
2
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2.1k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.7 years ago Clara ▴ 10
0
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1
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3.1k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by ▴ 10
1
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1
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1.1k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 30
4
votes
5
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1.7k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
0
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0
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907
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
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A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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