Showing : Heatmaps • reset
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DESeq2 Heatmap
heatmaps
updated 3 months ago by ★ 1.4k • written 3 months ago by • 0
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Label specific rows in pheatmap
heatmaps pheatmap
updated 6 months ago by 68k • written 6 months ago by ▴ 50
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5
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1.8k
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Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 8 months ago by • 0
2
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1.2k
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DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 8 months ago by ★ 4.8k • written 8 months ago by • 0
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315
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Error in drawHeatmap function
GeneOverlap heatmaps
10 months ago Johanna • 0
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 11 months ago by 68k • written 11 months ago by • 0
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2.2k
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Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 18 months ago by ▴ 780 • written 18 months ago by • 0
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2.4k
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edgeR heatmap construction and interpretation
heatmaps
updated 18 months ago by 52k • written 18 months ago by • 0
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1.1k
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Installing Gpart
gpart heat heatmaps
updated 18 months ago by 68k • written 18 months ago by • 0
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1.1k
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Drawing a heatmap with only limited genes
heatmaps
updated 22 months ago by • 0 • written 22 months ago by • 0
1
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789
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.1 years ago by ▴ 80 • written 2.1 years ago by ▴ 10
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by • 0
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.2 years ago • updated 2.1 years ago shuangshuang • 0
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.2 years ago gianni.drm • 0
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1.1k
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struggling to create a heatmap
DESeq2 heatmaps
updated 2.2 years ago by ★ 4.8k • written 2.2 years ago by ▴ 10
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How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.2 years ago by ▴ 40 • written 2.2 years ago by ▴ 10
2
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2
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1.0k
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.3 years ago • updated 2.2 years ago Sooni ▴ 10
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5
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5.9k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.2 years ago by 52k • written 2.3 years ago by ▴ 10
2
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5
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2.4k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.4 years ago Katharina • 0
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3.9k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
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3
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2.0k
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Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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2.2k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.7 years ago by ▴ 290 • written 2.7 years ago by • 0
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1.4k
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How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
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7.4k
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Scaling for p.heatmap
heatmaps pheatmap scaling
2.8 years ago Bhavana • 0
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3
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1.8k
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Persisting error in making a heatmap
heatmaps gplots
2.9 years ago • updated 2.8 years ago beslinail • 0
1
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1
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1.1k
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Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
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1
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1.5k
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Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.7 years ago by ▴ 40 • written 3.7 years ago by • 0
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2.2k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.9 years ago Clara ▴ 10
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3.3k
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Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.1 years ago by ★ 4.0k • written 4.2 years ago by ▴ 10
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1
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1.2k
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PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 30
4
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DEseq2 results
heatmaps DEGs PCA
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
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927
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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