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Showing :
GWAS
•
reset
0
votes
4
replies
842
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
15 months ago
Weiqiong
• 0
0
votes
0
replies
788
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
2.1 years ago
Sarah
• 0
0
votes
0
replies
793
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
2.1 years ago
helene.ruffieux
• 0
0
votes
0
replies
743
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
2.3 years ago
helene.ruffieux
• 0
0
votes
1
reply
718
views
gwas power calculation for quantitative traits
power
GWAS
written 2.9 years ago by
rajya82
• 0
1
vote
2
replies
4.3k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.4 years ago by
Anna
• 0 • written 4.6 years ago by
solanum
• 0
0
votes
0
replies
967
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
4.2 years ago
jiyeon.choi2
• 0
0
votes
3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 4.9 years ago by
mconomos
▴ 70 • written 4.9 years ago by
ferranpauls10
• 0
0
votes
0
replies
769
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
5.4 years ago
pwjeffries
• 0
0
votes
1
reply
1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.4 years ago
naglemi
▴ 10
1
vote
1
reply
970
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 5.6 years ago by
mconomos
▴ 70 • written 5.6 years ago by
naglemi
▴ 10
0
votes
1
reply
1.1k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.8 years ago by
zhengx
▴ 30 • written 5.8 years ago by
naglemi
▴ 10
0
votes
0
replies
913
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
5.9 years ago
zhu
• 0
0
votes
3
replies
1.3k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 5.9 years ago by
mconomos
▴ 70 • written 5.9 years ago by
naglemi
▴ 10
3
votes
4
replies
1.6k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 5.9 years ago by
mconomos
▴ 70 • written 5.9 years ago by
naglemi
▴ 10
0
votes
1
reply
957
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
6.0 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.1k
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
7.0 years ago
IV
▴ 30
2
votes
0
replies
1.4k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
8.0 years ago
enridomenici
▴ 10
0
votes
0
replies
1.2k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.9 years ago
Vincent J. Carey, Jr.
6.7k
19 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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