Showing : GWAS • reset
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4
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1.2k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.1 years ago Weiqiong • 0
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994
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.9 years ago Sarah • 0
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0
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1.0k
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.9 years ago helene.ruffieux • 0
0
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0
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931
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.1 years ago helene.ruffieux • 0
0
votes
1
reply
919
views
gwas power calculation for quantitative traits
power GWAS
written 3.7 years ago by • 0
1
vote
2
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5.2k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.2 years ago by • 0 • written 5.4 years ago by • 0
0
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0
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1.2k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.1 years ago jiyeon.choi2 • 0
0
votes
3
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1.5k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.8 years ago by ▴ 70 • written 5.8 years ago by • 0
0
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0
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970
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.2 years ago pwjeffries • 0
0
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1
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1.2k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.2 years ago naglemi ▴ 10
1
vote
1
reply
1.2k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
0
votes
1
reply
1.3k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.6 years ago by ▴ 30 • written 6.6 years ago by ▴ 10
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0
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1.1k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.7 years ago zhu • 0
0
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3
replies
1.5k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.8 years ago by ▴ 70 • written 6.8 years ago by ▴ 10
3
votes
4
replies
1.8k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.8 years ago by ▴ 70 • written 6.8 years ago by ▴ 10
0
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1
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1.2k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.8 years ago GENOMIC_region • 0
0
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0
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1.3k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.8 years ago IV ▴ 30
2
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0
replies
1.6k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.9 years ago enridomenici ▴ 10
0
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0
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1.3k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.7 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2 by Tom • 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq by caroline.zanchi • 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Votes
Comment: Filtering after DESeq
A: Normalized counts from DESeq2 results in similar but not equal total read count?
A: DESeq2: Different Dispersions for different sample groups
A: Contrasts & coefficients in limma
Answer: How to formulate 2 factor nested design in DESeq2
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