Showing : GWAS • reset
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votes
4
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1.1k
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Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
23 months ago Weiqiong • 0
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0
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940
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.7 years ago Sarah • 0
0
votes
0
replies
963
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.7 years ago helene.ruffieux • 0
0
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0
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887
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
2.9 years ago helene.ruffieux • 0
0
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1
reply
858
views
gwas power calculation for quantitative traits
power GWAS
written 3.5 years ago by • 0
1
vote
2
replies
4.9k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.0 years ago by • 0 • written 5.2 years ago by • 0
0
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0
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1.2k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
4.8 years ago jiyeon.choi2 • 0
0
votes
3
replies
1.5k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.5 years ago by ▴ 70 • written 5.5 years ago by • 0
0
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0
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900
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.0 years ago pwjeffries • 0
0
votes
1
reply
1.2k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.0 years ago naglemi ▴ 10
1
vote
1
reply
1.2k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.2 years ago by ▴ 70 • written 6.2 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.4 years ago by ▴ 30 • written 6.4 years ago by ▴ 10
0
votes
0
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1.0k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.5 years ago zhu • 0
0
votes
3
replies
1.5k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.5 years ago by ▴ 70 • written 6.5 years ago by ▴ 10
3
votes
4
replies
1.7k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.5 years ago by ▴ 70 • written 6.5 years ago by ▴ 10
0
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1
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1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.6 years ago GENOMIC_region • 0
0
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0
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1.2k
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.6 years ago IV ▴ 30
2
votes
0
replies
1.6k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.6 years ago enridomenici ▴ 10
0
votes
0
replies
1.3k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.5 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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