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GWAS
•
reset
0
votes
4
replies
1.2k
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
2.1 years ago
Weiqiong
• 0
0
votes
0
replies
981
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
2.8 years ago
Sarah
• 0
0
votes
0
replies
994
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
2.8 years ago
helene.ruffieux
• 0
0
votes
0
replies
920
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
3.1 years ago
helene.ruffieux
• 0
0
votes
1
reply
908
views
gwas power calculation for quantitative traits
power
GWAS
written 3.6 years ago by
rajya82
• 0
1
vote
2
replies
5.1k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 4.2 years ago by
Anna
• 0 • written 5.4 years ago by
solanum
• 0
0
votes
0
replies
1.2k
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
5.0 years ago
jiyeon.choi2
• 0
0
votes
3
replies
1.5k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 5.7 years ago by
mconomos
▴ 70 • written 5.7 years ago by
ferranpauls10
• 0
0
votes
0
replies
950
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
6.2 years ago
pwjeffries
• 0
0
votes
1
reply
1.2k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
6.2 years ago
naglemi
▴ 10
1
vote
1
reply
1.2k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 6.4 years ago by
mconomos
▴ 70 • written 6.4 years ago by
naglemi
▴ 10
0
votes
1
reply
1.3k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 6.6 years ago by
zhengx
▴ 30 • written 6.6 years ago by
naglemi
▴ 10
0
votes
0
replies
1.1k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
6.6 years ago
zhu
• 0
0
votes
3
replies
1.5k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 6.7 years ago by
mconomos
▴ 70 • written 6.7 years ago by
naglemi
▴ 10
3
votes
4
replies
1.8k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 6.7 years ago by
mconomos
▴ 70 • written 6.7 years ago by
naglemi
▴ 10
0
votes
1
reply
1.2k
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
6.8 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.3k
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
7.8 years ago
IV
▴ 30
2
votes
0
replies
1.6k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
8.8 years ago
enridomenici
▴ 10
0
votes
0
replies
1.3k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
9.7 years ago
Vincent J. Carey, Jr.
6.7k
19 results • Page
1 of 1
Recent ...
Replies
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★ 4.8k
If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…
Comment: fast apply on RleList
by
story.benjamin
▴ 20
Here's a test data.set if you need: library(GenomicRanges) library(rtracklayer) # gr test test.gr <- GRanges(seqnames…
Answer: BiocParallel_1.40.1.tar.gz not available
by
shepherl
4.1k
Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…
Comment: BiocParallel_1.40.1.tar.gz not available
by
Johan
• 0
Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …
Votes
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
Limma outputs different results for same sample?
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