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FlowCytometry
•
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0
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0
replies
551
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
11 months ago
info
▴ 10
0
votes
0
replies
570
views
Merging 2 staining panels
FlowCytometry
flowCore
21 months ago
michaela.gregorova13
• 0
2
votes
1
reply
1.2k
views
How to modify a compensation matrix in an fcs file
flowCore
FlowCytometry
2.0 years ago
aguirre
▴ 20
0
votes
0
replies
706
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
2.0 years ago
Dennis.hinkel
• 0
1
vote
1
reply
897
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry
Opencyto
updated 2.1 years ago by
Kevin Blighe
★ 4.0k • written 2.1 years ago by
Noël
• 0
0
votes
0
replies
645
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto
FlowCytometry
2.1 years ago
Noël
• 0
2
votes
9
replies
2.1k
views
Error when plotting flow cytometry data
FlowCytometry
flowCore
ggcyto
updated 2.2 years ago by
SamGG
▴ 350 • written 2.2 years ago by
alex
• 0
0
votes
0
replies
716
views
Reducing/sampling number of FCS events
FlowCytometry
flowCore
2.9 years ago
markkelly1983
▴ 20
0
votes
0
replies
853
views
Job:
Bioconductor developer
FlowCytometry
flowCore
3.0 years ago
markkelly1983
▴ 20
0
votes
1
reply
1.2k
views
[flowSOM] extracting data from tree
flowcytometry
flowSOM
flowSET
flowFrame
5.6 years ago
fabrizio.benedetti.82
• 0
0
votes
6
replies
2.4k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore
spillover
flowcytometry
updated 6.8 years ago by
Samuel Ahuno
• 0 • written 8.7 years ago by
Daniel Prieto
• 0
0
votes
1
reply
1.2k
views
[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore
flowcytometry
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
max.zhao
• 0
0
votes
1
reply
1.4k
views
Installation of "flowWorkspace" on Ubuntu fails
bioconductor
R
flowcytometry
7.8 years ago
mo
• 0
0
votes
2
replies
2.2k
views
Scaling fcs files with flowCore
flowCore
flowcytometry
8.6 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
2.1k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
8.7 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.4k
views
FlowViz package question
flowviz
flowcytometry
8.7 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.6k
views
read.flowSet error Error: vector::_M_range_check
software error
read.flowset()
read.fcs
flowcore
flowcytometry
8.8 years ago
e.bestion
• 0
1
vote
2
replies
1.4k
views
openCyto - samples with low cell counts
flowcytometry
opencyto
8.8 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.4k
views
samples are reordered in read.flowSet
flowcore
flowcytometry
9.3 years ago
Jiang, Mike
★ 1.3k
0
votes
2
replies
2.1k
views
xyplot can't find channel (flowViz)
flowcore
flowviz
flowcytometry
updated 9.4 years ago by
Jiang, Mike
★ 1.3k • written 9.4 years ago by
ericjkort
• 0
0
votes
0
replies
1.5k
views
Re: FlowStats help
flowclust
opencyto
flowcytometry
9.7 years ago
Jiang, Mike
★ 1.3k
1
vote
1
reply
1.7k
views
flowCore: using read.FCS with which.lines is not time efficient?
flowcore
read.FCS
flowcytometry
updated 9.9 years ago by
Jiang, Mike
★ 1.3k • written 10.0 years ago by
skiaphrene
▴ 10
4
votes
1
reply
1.9k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
10.2 years ago
Greg Finak
▴ 150
0
votes
0
replies
1.3k
views
FlowCore - reading in flowSets
FlowCytometry
PROcess
flowCore
FlowCytometry
PROcess
flowCore
11.8 years ago
Pieter Coussement
▴ 30
24 results • Page
1 of 1
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Replies
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…
Comment: WGCNA with TPM tables
by
ATpoint
★ 4.5k
WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
James W. MacDonald
67k
The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR
by
Yunshun Chen
▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Votes
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
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