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FASTA
•
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0
votes
2
replies
1.1k
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.5 years ago by
joannew
• 0
0
votes
0
replies
762
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
3.0 years ago
HELEN
• 0
0
votes
4
replies
3.7k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
3.2 years ago
HELEN
• 0
1
vote
0
replies
946
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
3.3 years ago
Endre Sebestyén
▴ 70
0
votes
1
reply
836
views
How to get similarity score between two genomes of different species
fasta
multi-species
4.1 years ago
drew.neely
• 0
0
votes
0
replies
847
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
4.1 years ago
dh.heredero
▴ 10
6
votes
8
replies
3.3k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.6k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 5.8 years ago by
Michael Lawrence
★ 11k • written 5.8 years ago by
k.vitting.seerup
▴ 120
0
votes
2
replies
5.8k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 5.8 years ago by
James W. MacDonald
67k • written 5.8 years ago by
christinafragel
• 0
0
votes
0
replies
996
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
6.0 years ago
A
▴ 40
0
votes
16
replies
4.7k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
6.1 years ago
writetoroopali
• 0
0
votes
0
replies
1.6k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.2k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
7.1 years ago
achaillon
• 0
2
votes
3
replies
2.4k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 7.2 years ago by
James W. MacDonald
67k • written 7.2 years ago by
Glubbdrubb
• 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 7.5 years ago by
tongtong.wang1210
• 0 • written 7.8 years ago by
Olorin
▴ 50
2
votes
4
replies
1.5k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
3.3k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
kevin.debray
• 0
1
vote
2
replies
2.5k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.8 years ago by
James W. MacDonald
67k • written 7.8 years ago by
fastabest
• 0
0
votes
5
replies
1.6k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.7k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.6 years ago by
Jeff Johnston
▴ 90 • written 8.6 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
3.2k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.7 years ago • updated 6 months ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.6k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 8.9 years ago by
Hervé Pagès
16k • written 9.0 years ago by
giuliobarth
• 0
4
votes
3
replies
4.1k
views
a package for read.fasta
seqinr
fasta
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
Angel
▴ 40
2
votes
0
replies
3.7k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.2 years ago
Sonali Arora
▴ 390
2
votes
4
replies
2.1k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 9.4 years ago by
xiaojing.wang
▴ 50 • written 9.4 years ago by
kristenbeck527
• 0
2
votes
2
replies
2.0k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
10.0 years ago
b.stielow
• 0
26 results • Page
1 of 1
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Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal
by
maripane
• 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
Answer: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…
Answer: Downloading Metagenomic Data with Higher Taxonomic Units
by
Levi Waldron
★ 1.1k
I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…
Comment: Differene between the Wald and LRT test for time-series gene expression data
by
Denise
• 0
This makes a lot of sense, thank you very much!
Votes
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A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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