Showing : ExpressionData • reset
3
votes
2
replies
853
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
10 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
579
views
Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 23 months ago by 43k • written 23 months ago by • 0
0
votes
2
replies
887
views
Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 2.0 years ago by • 0 • written 2.0 years ago by • 0
3
votes
2
replies
806
views
please resolve the issue
gene ExpressionData
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
1
vote
2
replies
4.0k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 2.2 years ago by 52k • written 2.2 years ago by • 0
0
votes
3
replies
1.1k
views
expression data
ExpressionData ExpressionNormalizationWorkflow
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
0
replies
734
views
edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
3.0 years ago Mafalda • 0
0
votes
1
reply
964
views
HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
3.0 years ago karl.stamm ▴ 10
2
votes
2
replies
1.1k
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 3.0 years ago by • 0 • written 3.1 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Error in loading data set
ExpressionData
updated 3.2 years ago by ▴ 780 • written 3.2 years ago by • 0
0
votes
0
replies
699
views
Gene expression changes in one condition
RNASeq Gene ExpressionData
3.4 years ago AZ ▴ 30
0
votes
2
replies
2.1k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.8 years ago Clara ▴ 10
3
votes
2
replies
1.5k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 4.0 years ago by 52k • written 4.0 years ago by • 0
1
vote
3
replies
1.2k
views
DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
0
votes
0
replies
1.5k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.2 years ago jol.espinoz ▴ 40
0
votes
1
reply
930
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 4.3 years ago by 43k • written 4.3 years ago by ▴ 50
0
votes
0
replies
973
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
16.7 years ago Gordon Smyth 52k
1
vote
0
replies
969
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
16.7 years ago Bettina Kulle Andreassen ▴ 20
0
votes
0
replies
1.2k
views
How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
17.8 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
0
votes
0
replies
1.4k
views
How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
17.8 years ago Martin Morgan 25k
20 results • Page 1 of 1
Recent ...
Replies
Comment: Co-occurrence Network Analysis between Algae and Bacteria by solarsunyy • 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object by chillykean • 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Awards • All
Scholar to Michael Love 43k
Popular Question to Rob • 0
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to Le • 0
Locations • All
United States, 29 minutes ago
Ukraine, 44 minutes ago
France, 1 hour ago
United States, 1 hour ago
France, 1 hour ago
Traffic: 709 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6