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Showing :
ExpressionData
•
reset
3
votes
2
replies
622
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools
limma
ExpressionData
RNASeq
edgeR
6 months ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
506
views
Time change in expression vs time change in phenotype
Transcriptomics
ExpressionData
DESeq2
updated 19 months ago by
Michael Love
42k • written 19 months ago by
Ivan
• 0
0
votes
2
replies
787
views
Doubt about expression data as well as assay
GEOquery
ExpressionData
assay
SummarizedExperiment
ExpressionAtlas
updated 20 months ago by
pmadrigal
• 0 • written 20 months ago by
Kritikaverma2707
• 0
3
votes
2
replies
721
views
please resolve the issue
gene
ExpressionData
updated 20 months ago by
James W. MacDonald
67k • written 20 months ago by
sonal
• 0
1
vote
2
replies
3.1k
views
R: Confused about Limma R package output being LogFC or Log2FC
limma
R
ExpressionData
updated 21 months ago by
Gordon Smyth
51k • written 22 months ago by
Keith
• 0
0
votes
3
replies
969
views
expression data
ExpressionData
ExpressionNormalizationWorkflow
updated 2.2 years ago by
James W. MacDonald
67k • written 2.2 years ago by
Upasana
• 0
0
votes
0
replies
684
views
edgeR testing interactions between two factors while controlling for blocking factor
edgeR
ExpressionData
RNASeqData
2.6 years ago
Mafalda
• 0
0
votes
1
reply
852
views
HSMMSingleCell metadata
ExperimentHubData
ExpressionData
CellDataSet
RNASeqData
2.7 years ago
karl.stamm
▴ 10
2
votes
2
replies
997
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression
DESeq2
ExpressionData
updated 2.7 years ago by
fivescarynightsgames
• 0 • written 2.7 years ago by
reza
▴ 10
0
votes
3
replies
1.1k
views
Error in loading data set
ExpressionData
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
Muhammad
• 0
0
votes
0
replies
644
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
3.0 years ago
AZ
▴ 30
0
votes
2
replies
2.0k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
3.4 years ago
Clara
▴ 10
3
votes
2
replies
1.4k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData
ArrayExpress
updated 3.6 years ago by
Gordon Smyth
51k • written 3.6 years ago by
Gero
• 0
1
vote
3
replies
1.2k
views
DESeq analysis with Biological replicate.
DESeq2
ExpressionData
GeneExpression
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
Javad_Sadeghi
• 0
0
votes
0
replies
1.4k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network
StatisticalMethod
WGCNA
ExpressionData
3.9 years ago
jol.espinoz
▴ 40
0
votes
1
reply
844
views
Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 3.9 years ago by
Michael Love
42k • written 3.9 years ago by
Bine
▴ 50
0
votes
0
replies
923
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
16.3 years ago
Gordon Smyth
51k
1
vote
0
replies
919
views
nested design with random factor and limma???
ExpressionData
limma
ExpressionData
limma
16.4 years ago
Bettina Kulle Andreassen
▴ 20
0
votes
0
replies
1.2k
views
How to display or output expression data with non-unique feature labels?
ExpressionData
ExpressionData
17.4 years ago
Kocherginsky, Masha [BSD] - HSD
▴ 10
0
votes
0
replies
1.4k
views
How to display or output expression data with non-unique feature labels?
Annotation
ExpressionData
Annotation
ExpressionData
17.4 years ago
Martin Morgan
25k
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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Gordon Smyth
51k
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