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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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24 months ago Maria Doyle ▴ 100
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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2.0 years ago Maria Doyle ▴ 100
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News: Translation Hackathon (community event) announcement
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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5.2 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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5.2 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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5.2 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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5.2 years ago shepherl 4.1k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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5.2 years ago shepherl 4.1k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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5.2 years ago shepherl 4.1k
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2018 Toronto Bioconductor Conference registration details?
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updated 7.4 years ago by 25k • written 7.4 years ago by • 0
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
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DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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