Showing : Ensembl • reset
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News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
3 months ago Ensembl_Jorge • 0
10
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41
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7.7k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 8 months ago by • 0 • written 6.2 years ago by ★ 4.1k
1
vote
0
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486
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News: Ensembl 111 has been released
Ensembl biomaRt
13 months ago Benjamin ▴ 30
3
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2
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771
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biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
14 months ago henrydionne ▴ 10
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2
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1.0k
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biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
18 months ago Miguel • 0
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2
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1.7k
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Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 22 months ago by ★ 2.1k • written 22 months ago by • 0
5
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3
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2.2k
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Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
2.3 years ago • updated 2.1 years ago jamie.gearing ▴ 60
1
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2
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1.0k
views
News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 2.3 years ago by ▴ 10
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814
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biomaRt, Ensembl, retrieve "Phenotypes" information
Ensembl biomaRt
2.5 years ago Hector • 0
7
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biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 11 weeks ago by • 0 • written 2.8 years ago by ▴ 40
2
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0
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926
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
2.8 years ago Benjamin ▴ 30
2
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3
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2.3k
views
Ensembl non responsive
ensembl R
2.8 years ago ksci ▴ 20
2
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1
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1.4k
views
Can Rsubread output use Ensembl gene IDs
Ensembl Rsubread
updated 2.9 years ago by 52k • written 2.9 years ago by ▴ 20
9
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14
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8.1k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 6 months ago by 4.1k • written 3.0 years ago by ▴ 40
0
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3
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2.3k
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biomaRT getBM() get stuck
biomaRt getbm ensembl
updated 3.1 years ago by ★ 6.6k • written 3.1 years ago by • 0
1
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0
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1.0k
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
3.2 years ago mchakiachvili ▴ 20
15
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13
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3.8k
views
celldex ensembl gene annotation issue
SingleR celldex HumanPrimaryCellAtlasData ensembl
updated 3.2 years ago by ▴ 10 • written 3.3 years ago by ▴ 20
0
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6
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2.3k
views
Getting paralogus genes from biomart for mouse
biomart biomaRt Ensembl
updated 3.5 years ago by ★ 4.0k • written 3.5 years ago by • 0
0
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2
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1.7k
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News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
4.0 years ago • updated 3.8 years ago mchakiachvili ▴ 20
1
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1
reply
1.7k
views
topGO question
Ensembl ensembldb
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
0
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0
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945
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
4.2 years ago mchakiachvili ▴ 20
5
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8
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17k
views
Ensembl site unresponsive
ensembl biomart
updated 3.8 years ago by • 0 • written 4.3 years ago by ▴ 50
2
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11
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7.2k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 4.0 years ago by ★ 6.6k • written 4.4 years ago by • 0
4
votes
17
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3.1k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by ▴ 10
0
votes
1
reply
1.2k
views
News: Ensembl 101 hase been released
Ensembl BioMart News
4.5 years ago mchakiachvili ▴ 20
1
vote
3
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3.1k
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 23 months ago by ★ 4.0k • written 4.6 years ago by • 0
1
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0
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1.4k
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News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
4.7 years ago Johannes Rainer ★ 2.1k
1
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0
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982
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
4.8 years ago Thomas Maurel ▴ 800
0
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4
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1.5k
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Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
1
vote
2
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1.7k
views
getBM biomart ensembl Error report
biomaRt ensembl
updated 4.8 years ago by ★ 6.6k • written 4.8 years ago by ▴ 10
0
votes
1
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2.0k
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
4.8 years ago Assa Yeroslaviz ★ 1.5k
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2.5k
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Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
0
votes
0
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769
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
5.0 years ago Astrid_Ensembl • 0
4
votes
4
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2.4k
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 5.0 years ago by ★ 6.6k • written 5.0 years ago by ▴ 10
0
votes
1
reply
881
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 5.0 years ago by 43k • written 5.0 years ago by • 0
0
votes
0
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956
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
5.1 years ago Thomas Maurel ▴ 800
4
votes
11
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2.6k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 5.1 years ago by ★ 3.4k • written 5.1 years ago by ▴ 10
1
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3
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2.7k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
5.2 years ago dmgatti ▴ 10
0
votes
14
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2.2k
views
Error while opening Mart with biomaRt package
software error ensembl biomart
5.2 years ago loicborcard01 • 0
0
votes
6
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1.2k
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 5.3 years ago by ★ 6.6k • written 5.3 years ago by ★ 1.4k
0
votes
7
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3.6k
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 5.3 years ago by 68k • written 5.3 years ago by ▴ 30
0
votes
0
replies
1.2k
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
5.4 years ago Thomas Maurel ▴ 800
0
votes
1
reply
889
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt Ensembl
updated 5.5 years ago by ★ 6.6k • written 5.5 years ago by • 0
0
votes
3
replies
1.8k
views
external_gene_id attribute removed from new biomaRt version
biomaRt Ensembl Ensemblplants
5.6 years ago Didi ▴ 10
1
vote
0
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1.1k
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
5.6 years ago Johannes Rainer ★ 2.1k
1
vote
0
replies
966
views
News: Ensembl 97 has been released
biomart ensembl e97 News
5.6 years ago James Allen ▴ 10
10
votes
8
replies
3.9k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
5.6 years ago m93 ▴ 10
0
votes
1
reply
1.3k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart ensembl R Bioconductor
5.6 years ago lbuo • 0
0
votes
4
replies
1.7k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by • 0
3
votes
2
replies
1.4k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 5.7 years ago by ★ 6.6k • written 5.7 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0
Oh, that's silly - thanks, will do!
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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