Showing : Enrichment • reset
1
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GSVA ssGSEA vs. Broad implementation of ssGSEA
enrichment GSVA ssGSEA
updated 3 months ago by ▴ 10 • written 4 months ago by ▴ 10
0
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0
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665
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topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
22 months ago Priya • 0
0
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4
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1.8k
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Questions about non-model organisms gene enrichment analysis
non-model enrichment organisms analysis
updated 2.2 years ago by ★ 4.1k • written 2.4 years ago by • 0
0
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0
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695
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
2.6 years ago María José • 0
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2
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1.2k
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 2.6 years ago by ★ 1.4k • written 2.6 years ago by • 0
1
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3
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2.6k
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enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
updated 12 months ago by • 0 • written 2.7 years ago by • 0
1
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3
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8.6k
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GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.9 years ago by ★ 3.4k • written 2.9 years ago by • 0
0
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0
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801
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Over-enrichment of cytobands in INDUCE-Seq
enrichment INDUCE-Seq
3.4 years ago Mark Dunning ★ 1.1k
2
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2
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1.1k
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Hypergeometric (gene set enrichment) test using "Categories" package
enrichment hypergeometric Categories
3.8 years ago josmantorres ▴ 10
0
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7
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3.6k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.3 years ago by 52k • written 4.3 years ago by ▴ 20
4
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4
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1.7k
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Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 4.4 years ago by 52k • written 4.4 years ago by ▴ 120
1
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2
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12k
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Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by • 0
0
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0
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975
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reactomePA error input file
r reactomePA enrichment
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by ▴ 10
3
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3
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6.5k
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Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 20 months ago by ★ 4.1k • written 4.8 years ago by • 0
5
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7
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2.9k
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Alternative tools to perform GO enrichment on DE genes
go de enrichment rnaseq goana
updated 4.9 years ago by 52k • written 4.9 years ago by ▴ 60
2
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1
reply
1.8k
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
5.0 years ago harelarik ▴ 60
3
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3
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1.5k
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
1
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1
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1.3k
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How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
6.1 years ago David ROUX ▴ 20
2
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3
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1.3k
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How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 6.1 years ago by 43k • written 6.1 years ago by ▴ 40
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0
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1.1k
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.5 years ago zhu • 0
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0
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1.4k
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Enrichment of GWAS SNPs in regulatory regions
genomicranges enrichment fisher
8.4 years ago enricoferrero ▴ 680
1
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2
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2.6k
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Bias correction for enrichment analysis of 450k methylation data => feed bias adjusted genes into IPA
goseq 450k enrichment
updated 10.0 years ago by ▴ 40 • written 10.0 years ago by ▴ 10
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0
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1.9k
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
10.3 years ago Guangchuang Yu ★ 1.2k
23 results • Page 1 of 1
Recent ...
Replies
Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA by pammelala304 • 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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