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EnhancedVolcano
•
reset
0
votes
7
replies
1.4k
views
EnhancedVolcano results in an empty plot
EnhancedVolcano
10 months ago
Patadù
▴ 20
1
vote
7
replies
903
views
Math expression in shapeCustom legend in EnhancedVolcano
EnhancedVolcano
11 months ago
pl23
• 0
0
votes
2
replies
2.0k
views
EnhancedVolcano with labels based on log2 Fold Change
EnhancedVolcano
written 16 months ago by
sara.jacobson
• 0
0
votes
4
replies
1.9k
views
enhanced volcano , different -log10pvalue of the same gene
EnhancedVolcano
RNASeqData
DifferentialExpression
23 months ago
ruba-mahmoud
• 0
4
votes
5
replies
3.1k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics
EnhancedVolcano
updated 24 months ago by
Kevin Blighe
★ 4.0k • written 24 months ago by
Peter
▴ 20
0
votes
1
reply
760
views
Error in names(label_color[label_color == "organe"]) <- "lysosome" : 'names' attribute [1] must be the same length as the vector [0]
EnhancedVolcano
updated 2.0 years ago by
elefth.pavlos
▴ 40 • written 2.0 years ago by
Phương Thùy
• 0
2
votes
2
replies
2.1k
views
Overlay points with EnhancedVolcano R
EnhancedVolcano
updated 2.1 years ago by
Kevin Blighe
★ 4.0k • written 2.1 years ago by
redafazazi
• 0
0
votes
2
replies
1.0k
views
Only display positive FC on volcano plot
EnhancedVolcano
updated 2.1 years ago by
Kevin Blighe
★ 4.0k • written 2.1 years ago by
Tanner
• 0
2
votes
4
replies
3.5k
views
EnhancedVolcano legendPosition error
EnhancedVolcano
updated 2.4 years ago by
elefth.pavlos
▴ 40 • written 2.4 years ago by
Allison
• 0
0
votes
2
replies
1.4k
views
Is it possible for the legend labels to be different from the Colcustom names?
EnhancedVolcano
enha
2.4 years ago
elefth.pavlos
▴ 40
0
votes
2
replies
1.4k
views
Unable to over/ride colour scheme with custom key-value pairs
EnhancedVolcano
updated 2.5 years ago by
Kevin Blighe
★ 4.0k • written 2.5 years ago by
patrirodry85
• 0
0
votes
1
reply
2.8k
views
Enhanced Volcano Error when drawing connectors
EnhancedVolcano
updated 2.5 years ago by
Kevin Blighe
★ 4.0k • written 2.5 years ago by
deena.maurer
• 0
0
votes
0
replies
792
views
MetaVolcanoR usage
limma
MetaVolcanoR
EnhancedVolcano
2.7 years ago
JAcky
• 0
0
votes
6
replies
3.2k
views
How to change all text, including point labels to Arial?
EnhancedVolcano
updated 2.8 years ago by
James W. MacDonald
68k • written 2.8 years ago by
junli1988
• 0
0
votes
3
replies
1.1k
views
change a column within a DESeq results object
EnhancedVolcano
updated 2.8 years ago by
Guido Hooiveld
★ 4.1k • written 2.8 years ago by
Matt
• 0
0
votes
5
replies
1.8k
views
Italicise
EnhancedVolcano
updated 2.9 years ago by
Kevin Blighe
★ 4.0k • written 2.9 years ago by
Pau
• 0
3
votes
5
replies
3.9k
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 2.9 years ago by
Kevin Blighe
★ 4.0k • written 2.9 years ago by
Bine
▴ 50
0
votes
0
replies
1.4k
views
Plotting Upregulated and down regulated genes in different colour
EnhancedVolcano
3.1 years ago
Somenath
• 0
1
vote
4
replies
2.1k
views
Issue with selectively labelling genes in the Enhanced Volcano package
EnhancedVolcano
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 3.2 years ago by
Jonathan
▴ 10
1
vote
1
reply
1.6k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 15 months ago by
mohamad.hajo89
• 0 • written 3.3 years ago by
ikotlar
▴ 10
1
vote
3
replies
2.7k
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 3.3 years ago by
acharest
• 0
0
votes
0
replies
999
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
3.4 years ago
bradyb
• 0
0
votes
2
replies
2.2k
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 3.5 years ago by
Kevin Blighe
★ 4.0k • written 3.5 years ago by
Raj
• 0
0
votes
5
replies
2.6k
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 3.6 years ago by
Johannes
• 0
5
votes
4
replies
7.2k
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 3.6 years ago by
Rachel
• 0
2
votes
6
replies
5.4k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel
RNASeq
R
EnhancedVolcano
3.7 years ago
Loren
▴ 10
2
votes
1
reply
8.3k
views
EnhancedVolcano Label Question
RNASeq
EnhancedVolcano
DEGs
updated 3.8 years ago by
Kevin Blighe
★ 4.0k • written 3.8 years ago by
robledoj13
• 0
7
votes
8
replies
8.4k
views
Warning in EnhancedVolcano plot
volcano-plot
EnhancedVolcano
updated 3.9 years ago by
Kevin Blighe
★ 4.0k • written 4.0 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
5.2k
views
EnhancedVolcano plot with colCustom
EnhancedVolcano
4.0 years ago
Neeraja Vegesna
▴ 10
1
vote
1
reply
2.9k
views
Enhanced Volcano Plot Controlling Color Layers
EnhancedVolcano
4.0 years ago
dk0319
• 0
6
votes
9
replies
2.8k
views
How to better design a Volcano plot
EnhancedVolcano
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
suxxa
▴ 20
1
vote
8
replies
4.3k
views
Problem selectively labelling points in the Enhanced Volcano package
EnhancedVolcano
4.3 years ago
Peter
▴ 10
6
votes
8
replies
4.8k
views
Jitter p-values in volcano plot
EnhancedVolcano
DESeq2
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
philipp.rewe
▴ 20
4
votes
2
replies
3.6k
views
enhancedVolcano: Why are only a few of my select labels showing up?
enha
EnhancedVolcano
4.4 years ago
noahhelton98
▴ 20
3
votes
5
replies
3.0k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 4.5 years ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
camillab.
▴ 10
1
vote
12
replies
2.4k
views
EnhancedVolcano - highlight specific points by changing shape
enhancedvolcano
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
n.tear
▴ 20
0
votes
20
replies
4.3k
views
pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
EnhancedVolcano
4.6 years ago • updated 4.3 years ago
knholm
• 0
1
vote
1
reply
3.3k
views
Increase text size of axis labels in EnhancedVolcano
EnhancedVolcano
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
knholm
• 0
4
votes
7
replies
3.3k
views
visualize significant upregultaed genes and downregultaed genes with different colors (EnhancedVolcano)
enhancedvolcano
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
gaom001
▴ 10
0
votes
3
replies
1.3k
views
Enhanced volcanoplots from DESeq2
EnhancedVolcano
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
rimss.khurana
• 0
1
vote
6
replies
24k
views
Log2FC data type error in EnhansedVolcano package
software error
enhancedvolcano
5.5 years ago
sauuyer
▴ 10
0
votes
9
replies
16k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
written 6.2 years ago by
ricardo3889
• 0
42 results • Page
1 of 1
Recent ...
Replies
Answer: fast apply on RleList
by
story.benjamin
▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList
by
story.benjamin
▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList
by
James W. MacDonald
68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation
by
James W. MacDonald
68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`?
by
matthew
• 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
Votes
annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
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