Showing : ENmix • reset
0
votes
5
replies
864
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preprocessENmix colnames Error
ENmix Preprocessing
7 months ago • updated 6 months ago Eve • 0
1
vote
2
replies
462
views
How to get the DMR?
ENmix
8 months ago Alex • 0
0
votes
6
replies
1.1k
views
Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 9 months ago by • 0 • written 9 months ago by ▴ 10
0
votes
18
replies
3.2k
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problem installing ENmix package
ENmix Bioconductor rtracklayer
written 4.0 years ago by • 0
0
votes
2
replies
1.2k
views
Help with ENmix readidat
ENmix IlluminaHumanMethylationEPICmanifest
updated 9 months ago by 68k • written 2.8 years ago by • 0
0
votes
0
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921
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can ENmix::oxBS.MLE be run on comBat-adjusted data?
ENmix comBat
3.9 years ago joannew • 0
0
votes
0
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757
views
ENmix: how to combine oxBS.MLE with RCP?
ENmix
4.0 years ago joannew • 0
0
votes
1
reply
1.1k
views
could not find function "ComBat.mc"
ENmix
updated 4.3 years ago by 4.1k • written 4.3 years ago by ▴ 10
1
vote
0
replies
765
views
Error in peak calling with Combp
ENmix
4.3 years ago mwjnorris ▴ 10
0
votes
0
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833
views
Error for ENmix::bmiq.mc() on one sample
ENmix
6.0 years ago moldach ▴ 20
0
votes
0
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1.4k
views
Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
6.0 years ago moldach ▴ 20
1
vote
2
replies
1.2k
views
how to install ENmix github master branch on Ubuntu machine?
ENmix
written 8.5 years ago by ▴ 10
0
votes
4
replies
2.3k
views
ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
8.7 years ago DSP • 0
13 results • Page 1 of 1
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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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Popular Question to James W. MacDonald 68k
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Popular Question to Stefano Mangiola ▴ 40
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