Bioconductor ENmix

Showing : ENmix • reset

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Preprocessing ENmix

17 days ago balf0020 • 0

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805

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ENmix Preprocessing

5 months ago Eve • 0

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410

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ENmix

6 months ago Alex • 0

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1.1k

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ENmix Bioconductor

updated 7 months ago by kred • 0 • written 8 months ago by minardsmitha ▴ 10

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3.1k

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ENmix Bioconductor rtracklayer

written 3.9 years ago by lea • 0

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1.2k

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ENmix IlluminaHumanMethylationEPICmanifest

updated 8 months ago by James W. MacDonald 67k • written 2.7 years ago by Daphna • 0

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892

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ENmix comBat

3.8 years ago joannew • 0

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727

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ENmix

3.9 years ago joannew • 0

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1.1k

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ENmix

updated 4.2 years ago by shepherl 4.1k • written 4.2 years ago by ycding ▴ 10

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744

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ENmix

4.2 years ago mwjnorris ▴ 10

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807

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ENmix

5.9 years ago moldach ▴ 20

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1.4k

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methylation ENmix BMIQ wateRmelon

5.9 years ago moldach ▴ 20

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1.2k

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ENmix

written 8.4 years ago by avilella ▴ 10

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2.2k

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ENmix combat.mc illumina450k combat sva

8.6 years ago DSP • 0

14 results • Page 1 of 1

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Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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