Bioconductor ENmix

Showing : ENmix • reset

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Preprocessing ENmix

26 days ago balf0020 • 0

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816

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ENmix Preprocessing

6 months ago • updated 5 months ago Eve • 0

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419

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ENmix

7 months ago Alex • 0

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1.1k

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ENmix Bioconductor

updated 8 months ago by kred • 0 • written 8 months ago by minardsmitha ▴ 10

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3.2k

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ENmix Bioconductor rtracklayer

written 3.9 years ago by lea • 0

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1.2k

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ENmix IlluminaHumanMethylationEPICmanifest

updated 8 months ago by James W. MacDonald 67k • written 2.7 years ago by Daphna • 0

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899

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ENmix comBat

3.8 years ago joannew • 0

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734

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ENmix

3.9 years ago joannew • 0

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1.1k

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ENmix

updated 4.2 years ago by shepherl 4.1k • written 4.2 years ago by ycding ▴ 10

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750

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ENmix

4.3 years ago mwjnorris ▴ 10

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813

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ENmix

5.9 years ago moldach ▴ 20

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1.4k

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methylation ENmix BMIQ wateRmelon

6.0 years ago • updated 5.9 years ago moldach ▴ 20

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1.2k

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ENmix

written 8.5 years ago by avilella ▴ 10

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2.2k

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ENmix combat.mc illumina450k combat sva

8.6 years ago DSP • 0

14 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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