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ENSEMBL
•
reset
0
votes
0
replies
142
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
4 weeks ago
Ensembl_Jorge
• 0
10
votes
41
replies
7.2k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 6 months ago by
Daniele
• 0 • written 6.0 years ago by
Guido Hooiveld
★ 4.1k
1
vote
0
replies
436
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
10 months ago
Benjamin
▴ 30
3
votes
2
replies
703
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
12 months ago
henrydionne
▴ 10
1
vote
2
replies
948
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
16 months ago
Miguel
• 0
0
votes
2
replies
1.5k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 19 months ago by
Johannes Rainer
★ 2.1k • written 19 months ago by
Christopher
• 0
5
votes
3
replies
2.0k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt
ensembldb
ensembl
2.1 years ago • updated 22 months ago
jamie.gearing
▴ 60
1
vote
2
replies
965
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 2.1 years ago by
Louisse
▴ 10
0
votes
0
replies
769
views
biomaRt, Ensembl, retrieve "Phenotypes" information
Ensembl
biomaRt
2.3 years ago
Hector
• 0
7
votes
5
replies
8.5k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 3 days ago by
Ke
• 0 • written 2.6 years ago by
kieran.short
▴ 40
2
votes
0
replies
871
views
News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
2.6 years ago
Benjamin
▴ 30
2
votes
3
replies
2.0k
views
Ensembl non responsive
ensembl
R
2.6 years ago
ksci
▴ 20
2
votes
1
reply
1.3k
views
Can Rsubread output use Ensembl gene IDs
Ensembl
Rsubread
updated 2.7 years ago by
Gordon Smyth
51k • written 2.7 years ago by
agustin.gonvi
▴ 20
9
votes
14
replies
7.5k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 4 months ago by
shepherl
4.1k • written 2.8 years ago by
jon.klonowski
▴ 40
0
votes
3
replies
2.0k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 2.9 years ago by
Mike Smith
★ 6.6k • written 2.9 years ago by
Ariel Simon
• 0
1
vote
0
replies
958
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
3.0 years ago
mchakiachvili
▴ 20
15
votes
13
replies
3.7k
views
celldex ensembl gene annotation issue
SingleR
celldex
HumanPrimaryCellAtlasData
ensembl
updated 3.0 years ago by
xiang
▴ 10 • written 3.0 years ago by
immuno.dh
▴ 20
0
votes
6
replies
2.2k
views
Getting paralogus genes from biomart for mouse
biomart
biomaRt
Ensembl
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 3.3 years ago by
hemantcnaik
• 0
0
votes
2
replies
1.6k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.8 years ago • updated 3.6 years ago
mchakiachvili
▴ 20
1
vote
1
reply
1.6k
views
topGO question
Ensembl
ensembldb
updated 4.0 years ago by
James W. MacDonald
67k • written 4.0 years ago by
H. Stotz
• 0
0
votes
0
replies
898
views
News:
Ensembl 102 has been released
Ensembl
biomaRt
BioMar
ensembldb
4.0 years ago
mchakiachvili
▴ 20
5
votes
8
replies
15k
views
Ensembl site unresponsive
ensembl
biomart
updated 3.6 years ago by
tommaso.gastaldi
• 0 • written 4.1 years ago by
lirongrossmann
▴ 50
2
votes
11
replies
6.9k
views
biomaRT connexion problem make failed my unit tests
biomaRt
Peer's Certificate
Ensembl
updated 3.8 years ago by
Mike Smith
★ 6.6k • written 4.2 years ago by
ilysR
• 0
4
votes
17
replies
2.9k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt
annotation
Ensembl
annotationHub
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
Didi
▴ 10
0
votes
1
reply
1.1k
views
News:
Ensembl 101 hase been released
Ensembl
BioMart
News
4.3 years ago
mchakiachvili
▴ 20
1
vote
3
replies
3.0k
views
Convert mouse gene ids to hamster gene ids
biomart
R
ensembl
updated 21 months ago by
Kevin Blighe
★ 4.0k • written 4.4 years ago by
rykerklie7
• 0
1
vote
0
replies
1.4k
views
News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
News
4.5 years ago
Johannes Rainer
★ 2.1k
1
vote
0
replies
930
views
News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
news
News
4.6 years ago
Thomas Maurel
▴ 800
0
votes
4
replies
1.4k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon
tximport
tximportdata
ensembl
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
slouis
• 0
1
vote
2
replies
1.6k
views
getBM biomart ensembl Error report
biomaRt
ensembl
updated 4.6 years ago by
Mike Smith
★ 6.6k • written 4.6 years ago by
nina.hahn
▴ 10
0
votes
1
reply
1.9k
views
ChIPSeeker with Ensembl IDs
chipseeker
Ensembl
EnsDb.Mmusculus.v79
ensembldb
4.6 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.4k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart
mart
ensembl
updated 4.6 years ago by
James W. MacDonald
67k • written 4.6 years ago by
didemdkn
• 0
0
votes
0
replies
730
views
News:
Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt
Ensembl
News
4.7 years ago
Astrid_Ensembl
• 0
4
votes
4
replies
2.2k
views
biomaRt getSequence fails with genomic coordinates
biomart
getSequence
genomic coordinates
ENSEMBL
bug report
updated 4.8 years ago by
Mike Smith
★ 6.6k • written 4.8 years ago by
Ni-Ar
▴ 10
0
votes
1
reply
833
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 4.8 years ago by
Michael Love
42k • written 4.8 years ago by
mohsamir2016
• 0
0
votes
0
replies
910
views
News:
Ensembl 99 has been released and renaming of species
biomart
ensembl
e99
mart
news
News
4.9 years ago
Thomas Maurel
▴ 800
4
votes
11
replies
2.5k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 4.9 years ago by
Robert Castelo
★ 3.4k • written 4.9 years ago by
Jeremy Beales
▴ 10
1
vote
3
replies
2.6k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
4.9 years ago
dmgatti
▴ 10
0
votes
14
replies
2.1k
views
Error while opening Mart with biomaRt package
software error
ensembl
biomart
5.0 years ago
loicborcard01
• 0
0
votes
6
replies
1.2k
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl
biomaRt
updated 5.1 years ago by
Mike Smith
★ 6.6k • written 5.1 years ago by
swbarnes2
★ 1.4k
0
votes
7
replies
3.4k
views
BioMart does not find mouse homologs of human genes
biomart
homolog
ortholog
gene conversion
ensembl
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
atakanekiz
▴ 30
0
votes
0
replies
1.1k
views
News:
Ensembl 98 has been released and renaming of species
biomart
ensembl
e98
mart
News
5.2 years ago
Thomas Maurel
▴ 800
0
votes
1
reply
848
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt
Ensembl
updated 5.3 years ago by
Mike Smith
★ 6.6k • written 5.3 years ago by
olibee1315
• 0
0
votes
3
replies
1.7k
views
external_gene_id attribute removed from new biomaRt version
biomaRt
Ensembl
Ensemblplants
5.4 years ago
Didi
▴ 10
1
vote
0
replies
1.1k
views
News:
ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation
ensembldb
Ensembl
News
5.4 years ago
Johannes Rainer
★ 2.1k
1
vote
0
replies
928
views
News:
Ensembl 97 has been released
biomart
ensembl
e97
News
5.4 years ago
James Allen
▴ 10
10
votes
8
replies
3.6k
views
Best alternative annotation package to BiomaRt
R
biomaRt
Ensembl
rnaseq
5.4 years ago
m93
▴ 10
0
votes
1
reply
1.2k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart
ensembl
R
Bioconductor
5.4 years ago
lbuo
• 0
0
votes
4
replies
1.6k
views
Error message: "Request to BioMart web service failed."
BiocManager
biomaRt
listMarts()
ensembl
Biomart
updated 5.4 years ago by
Mike Smith
★ 6.6k • written 5.4 years ago by
ktd2918
• 0
3
votes
2
replies
1.3k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart
geo
software error
ensembl
updated 5.5 years ago by
Mike Smith
★ 6.6k • written 5.5 years ago by
wes
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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