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Deprecation
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3
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18
replies
4.1k
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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
22 months ago • updated 12 months ago
shepherl
4.1k
0
votes
2
replies
1.3k
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
2.0 years ago • updated 23 months ago
shepherl
4.1k
1
vote
8
replies
1.8k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.1 years ago by
shepherl
4.1k
0
votes
2
replies
1.1k
views
News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
2.5 years ago
shepherl
4.1k
0
votes
0
replies
1.1k
views
Running deprecated packages
ToPASeq
Deprecation
3.0 years ago
pgauthi1
• 0
0
votes
4
replies
1.6k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
3.1 years ago • updated 2.5 years ago
shepherl
4.1k
0
votes
5
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
3.5 years ago • updated 3.0 years ago
shepherl
4.1k
2
votes
2
replies
1.8k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
4.4 years ago • updated 4.0 years ago
shepherl
4.1k
0
votes
3
replies
1.3k
views
Which library now contains the ssdCoverage command that used to be found in the htseqtools package for R version 4.0.1 ?
Deprecation
chipseq
htseqtools
Bioconductor
updated 4.1 years ago by
Basti
▴ 780 • written 4.1 years ago by
Mick
• 0
0
votes
0
replies
1.2k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.2 years ago
shepherl
4.1k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.3 years ago
shepherl
4.1k
0
votes
0
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
5.4 years ago
shepherl
4.1k
0
votes
2
replies
2.2k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
5.6 years ago • updated 5.4 years ago
shepherl
4.1k
0
votes
0
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.6 years ago
shepherl
4.1k
0
votes
1
reply
1.3k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
5.7 years ago • updated 5.6 years ago
shepherl
4.1k
0
votes
3
replies
1.4k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.9 years ago
shepherl
4.1k
0
votes
1
reply
1.1k
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
6.0 years ago • updated 5.9 years ago
shepherl
4.1k
17 results • Page
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Recent ...
Replies
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
donnycrimson
• 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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