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3.6 years ago shepherl 4.1k
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4.7 years ago • updated 4.4 years ago shepherl 4.1k
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News: Import Deadlines for RELEASE 3.11
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News: Bioconductor Release 3.10 Code Freeze Deadline
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News: Important Deadlines for RELEASE
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News: Bioconductor 3.10 db0s are available
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News: Deadline for commits to current Release 3.9 Branch
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5.1 years ago shepherl 4.1k
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News: New Package Submission Deadline for Bioc Release 3.10
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News: Deadline for devel branch 3.9 to pass R CMD build and R CMD check
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News: New Package Submission Deadline for Bioc Release 3.9
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6.2 years ago shepherl 4.1k
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News: Deadline for commits to current Release 3.7 Branch
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23 results • Page 1 of 1
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Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
Comment: Differential Expression Genes as Independent Variables by abadgerw • 0
The data that is repeated is a quantitative metric of post-mortem pathology across multiple sections. Not all patients have the same number…
Answer: Crossover design with limma by Gordon Smyth 52k
Your experiment is somewhat more elaborate than a classical crossover design because of the period-specific baseline controls. The analyses…
Answer: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Sorry, your question doesn't make sense to me. There are tens of thousands of genes and you can't run a mixed model analysis with one depen…
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Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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Scholar to Gordon Smyth 52k
Popular Question to mohammedtoufiq91 ▴ 10
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