Showing : DMRcate • reset
0
votes
1
reply
181
views
No preprocessing allowed for EPICv2 with DMRcate
missMethyl DMRcate
updated 7 weeks ago by 68k • written 7 weeks ago by • 0
0
votes
1
reply
1.4k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 8 weeks ago by • 0 • written 3.2 years ago by ▴ 50
2
votes
4
replies
530
views
Can we get beta values with DMRcate package
DMRcatedata DMRcate
11 weeks ago Melisa Tecik • 0
4
votes
8
replies
1.1k
views
how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
DMRcate minfi
12 weeks ago • updated 10 days ago xiaofeiwang198266 • 0
1
vote
2
replies
289
views
Limma Interaction Effect with Covariates
limma DMRcate
3 months ago kitzhu • 0
0
votes
0
replies
250
views
DMRcate pcutoff setting
EpicV2 DMRcate
4 months ago kitzhu • 0
3
votes
12
replies
4.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 7 months ago by ▴ 230 • written 15 months ago by ▴ 10
3
votes
2
replies
862
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 9 months ago by 52k • written 10 months ago by • 0
1
vote
2
replies
1.8k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 10 months ago by ▴ 230 • written 2.0 years ago by ▴ 10
0
votes
0
replies
424
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
11 months ago Macsue • 0
1
vote
2
replies
2.2k
views
EPIC array hg38 annotation?
minfi DMRcate
12 months ago mycetes • 0
0
votes
0
replies
387
views
What is the significance of DMR in DMRcate
DMRcate
13 months ago chuanjiao6 • 0
3
votes
2
replies
551
views
Question about DMRcate
DMRcate dmrcate
13 months ago chuanjiao6 • 0
8
votes
7
replies
2.0k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 15 months ago by ▴ 30
0
votes
5
replies
1.0k
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 16 months ago by 68k • written 16 months ago by ▴ 10
0
votes
1
reply
1.0k
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 16 months ago by 4.1k • written 16 months ago by • 0
3
votes
4
replies
1.5k
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
17 months ago Jitendra ▴ 10
0
votes
1
reply
847
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 18 months ago by ▴ 230 • written 18 months ago by • 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 22 months ago by ▴ 230 • written 22 months ago by • 0
6
votes
12
replies
2.5k
views
Error when loading DMRcate
DMRcate
2.0 years ago Bazingastats • 0
0
votes
0
replies
958
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
2.0 years ago gilliangoobie • 0
2
votes
6
replies
2.4k
views
DMRcate
DMRcate R DMRcatedata Markdown
2.1 years ago • updated 2.0 years ago yr542 • 0
0
votes
1
reply
1.2k
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 3.3 years ago by 68k • written 3.3 years ago by ▴ 30
0
votes
6
replies
1.7k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 3.6 years ago by ▴ 20 • written 4.6 years ago by ▴ 10
1
vote
2
replies
1.8k
views
DMRcate extractRanges error
DMRcate
4.0 years ago macsue.jacques ▴ 10
0
votes
0
replies
964
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
4.3 years ago Mike ▴ 10
3
votes
4
replies
1.4k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 4.4 years ago by ▴ 230 • written 4.4 years ago by ▴ 10
0
votes
2
replies
997
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
4.6 years ago zh9118 • 0
4
votes
9
replies
3.7k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 3.3 years ago by ▴ 30 • written 4.7 years ago by ▴ 10
1
vote
8
replies
2.6k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 4.8 years ago by ▴ 230 • written 4.8 years ago by ▴ 40
3
votes
5
replies
1.7k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 5.4 years ago by 68k • written 5.4 years ago by ▴ 10
0
votes
3
replies
2.2k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 5.5 years ago by ▴ 230 • written 5.5 years ago by • 0
0
votes
2
replies
1.5k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 5.6 years ago by ▴ 290 • written 5.6 years ago by • 0
1
vote
3
replies
1.5k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 5.8 years ago by 68k • written 5.8 years ago by ▴ 10
2
votes
18
replies
5.8k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 6.7 years ago by • 0 • written 8.8 years ago by ▴ 160
0
votes
3
replies
2.0k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
6.7 years ago 574233829 • 0
2
votes
6
replies
2.3k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.8 years ago by ▴ 230 • written 6.8 years ago by • 0
0
votes
3
replies
2.3k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 7.7 years ago by ▴ 90 • written 7.7 years ago by • 0
1
vote
2
replies
1.9k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 7.8 years ago by ▴ 230 • written 7.8 years ago by • 0
1
vote
3
replies
1.8k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.9 years ago by 68k • written 7.9 years ago by ▴ 10
0
votes
11
replies
4.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 13 months ago by ▴ 230 • written 7.9 years ago by ★ 2.0k
1
vote
10
replies
3.6k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.9 years ago by ▴ 230 • written 8.0 years ago by ▴ 10
0
votes
1
reply
1.8k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 8.1 years ago by ▴ 230 • written 8.1 years ago by ▴ 10
0
votes
2
replies
1.7k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 8.1 years ago by ▴ 230 • written 8.1 years ago by • 0
1
vote
2
replies
1.4k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 8.1 years ago by ▴ 230 • written 8.1 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 8.1 years ago by ▴ 230 • written 8.1 years ago by • 0
0
votes
9
replies
20k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 8.2 years ago by ▴ 230 • written 8.3 years ago by • 0
1
vote
15
replies
2.8k
views
DMRcate results meanpvals
dmrcate
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by ▴ 160
0
votes
1
reply
1.2k
views
conflicts in chromosome number
DMRcate
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by • 0
2
votes
2
replies
2.0k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 9.2 years ago by ▴ 230 • written 9.2 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Awards • All
Popular Question to Matthew McCormack ▴ 180
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.1k
Popular Question to Marco • 0
Popular Question to Stefano Mangiola ▴ 40
Locations • All
Japan, 14 minutes ago
United States, 1 hour ago
United States, 2 hours ago
UPF, Barcelona, Spain, 4 hours ago
United States, 5 hours ago
Traffic: 622 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6