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DMRcate
•
reset
0
votes
4
replies
2.4k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
written 5.6 years ago by
anne-kristin.stavrum
• 0
0
votes
1
reply
263
views
No preprocessing allowed for EPICv2 with DMRcate
missMethyl
DMRcate
updated 12 weeks ago by
James W. MacDonald
68k • written 12 weeks ago by
maximuscfyeung
• 0
0
votes
1
reply
1.4k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
updated 3 months ago by
ming
• 0 • written 3.3 years ago by
Ahdee
▴ 60
2
votes
4
replies
607
views
Can we get beta values with DMRcate package
DMRcatedata
DMRcate
3 months ago
Melisa Tecik
• 0
4
votes
8
replies
1.2k
views
how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
DMRcate
minfi
4 months ago • updated 6 weeks ago
xiaofeiwang198266
• 0
1
vote
2
replies
320
views
Limma Interaction Effect with Covariates
limma
DMRcate
4 months ago
kitzhu
• 0
0
votes
0
replies
285
views
DMRcate pcutoff setting
EpicV2
DMRcate
5 months ago
kitzhu
• 0
3
votes
12
replies
4.7k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 8 months ago by
Tim Peters
▴ 230 • written 16 months ago by
rae.alshammari
▴ 10
3
votes
2
replies
895
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 10 months ago by
Gordon Smyth
52k • written 11 months ago by
Kim
• 0
1
vote
2
replies
1.9k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 11 months ago by
Tim Peters
▴ 230 • written 2.1 years ago by
jose.ramirez1
▴ 10
0
votes
0
replies
463
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
12 months ago
Macsue
• 0
1
vote
2
replies
2.4k
views
EPIC array hg38 annotation?
minfi
DMRcate
13 months ago
mycetes
• 0
0
votes
0
replies
413
views
What is the significance of DMR in DMRcate
DMRcate
14 months ago
chuanjiao6
• 0
3
votes
2
replies
567
views
Question about DMRcate
DMRcate
dmrcate
14 months ago
chuanjiao6
• 0
8
votes
7
replies
2.0k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 16 months ago by
Daniel E. Weeks
▴ 30
0
votes
5
replies
1.0k
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
Jitendra
▴ 10
0
votes
1
reply
1.1k
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate
DMR.plot
updated 17 months ago by
shepherl
4.1k • written 17 months ago by
Chiara
• 0
3
votes
4
replies
1.5k
views
DMRcate design
Epigenetics
EpigeneticsWorkflow
DMRcate
18 months ago
Jitendra
▴ 10
0
votes
1
reply
884
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 20 months ago by
Tim Peters
▴ 230 • written 20 months ago by
b.curran
• 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 23 months ago by
Tim Peters
▴ 230 • written 23 months ago by
Grace
• 0
6
votes
12
replies
2.6k
views
Error when loading DMRcate
DMRcate
2.1 years ago
Bazingastats
• 0
0
votes
0
replies
989
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
2.1 years ago
gilliangoobie
• 0
2
votes
6
replies
2.5k
views
DMRcate
DMRcate
R
DMRcatedata
Markdown
2.1 years ago
yr542
• 0
0
votes
1
reply
1.2k
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 3.4 years ago by
James W. MacDonald
68k • written 3.4 years ago by
jfertaj
▴ 30
0
votes
6
replies
1.7k
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 3.7 years ago by
Jovana Maksimovic
▴ 20 • written 4.7 years ago by
yoursbassanio
▴ 10
1
vote
2
replies
1.9k
views
DMRcate extractRanges error
DMRcate
4.1 years ago
macsue.jacques
▴ 10
0
votes
0
replies
991
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
4.4 years ago
Mike
▴ 10
3
votes
4
replies
1.5k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 4.5 years ago by
Tim Peters
▴ 230 • written 4.5 years ago by
Jeni
▴ 10
0
votes
2
replies
1.0k
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
4.7 years ago
zh9118
• 0
4
votes
9
replies
3.7k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
differencial methylation
updated 3.4 years ago by
jfertaj
▴ 30 • written 4.8 years ago by
Jeni
▴ 10
1
vote
8
replies
2.7k
views
extract CpGs from DMRcate results
dmrcate
cpgs
results.ranges
DMRcate
updated 4.9 years ago by
Tim Peters
▴ 230 • written 4.9 years ago by
landenshanie
▴ 40
3
votes
5
replies
1.8k
views
DMRcate: Cpgids in DMR
methylation
Epic
annotation
DMRcate
updated 5.5 years ago by
James W. MacDonald
68k • written 5.5 years ago by
yoursbassanio
▴ 10
0
votes
2
replies
1.6k
views
cpg.annotate model requirements
DMRcate
ChAMP
updated 5.7 years ago by
Yuan Tian
▴ 290 • written 5.7 years ago by
kadm
• 0
1
vote
3
replies
1.6k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
yoursbassanio
▴ 10
2
votes
18
replies
6.1k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 6.7 years ago by
574233829
• 0 • written 8.8 years ago by
Giovanni Calice
▴ 160
0
votes
3
replies
2.0k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate
gene symbol
coordinate
6.7 years ago
574233829
• 0
2
votes
6
replies
2.4k
views
Bumphunting for longitudinal data
bumphunter
minfi
lmer
dmrcate
dmr analysis
updated 6.9 years ago by
Tim Peters
▴ 230 • written 6.9 years ago by
Ashlynn
• 0
0
votes
3
replies
2.3k
views
error in champ.DMR using DMRcate (v2.8.3)
champ
dmrcate
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 7.8 years ago by
Yuan Tian
▴ 90 • written 7.8 years ago by
mia
• 0
1
vote
2
replies
1.9k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate
dmrcate
methylation
updated 7.8 years ago by
Tim Peters
▴ 230 • written 7.8 years ago by
Ellen O
• 0
1
vote
3
replies
1.8k
views
coef in dmrcate
dmrcate
bumphunter
methylation
epic
updated 8.0 years ago by
James W. MacDonald
68k • written 8.0 years ago by
yoursbassanio
▴ 10
0
votes
11
replies
4.9k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate
minfi
updated 14 months ago by
Tim Peters
▴ 230 • written 8.0 years ago by
Jenny Drnevich
★ 2.0k
1
vote
10
replies
3.6k
views
minfi, lumi, methylumi, DMRcate installation error
minfi
lumi
methylumi
dmrcate
illuminahumanmethylation450kanno.ilmn12.hg19
updated 8.0 years ago by
Tim Peters
▴ 230 • written 8.1 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.8k
views
DMRcate: Scaling factor for bandwidth
dmrcate
dmr analysis
dmr
updated 8.2 years ago by
Tim Peters
▴ 230 • written 8.2 years ago by
alexandria.andrayas
▴ 10
0
votes
2
replies
1.7k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate
visualization
updated 8.2 years ago by
Tim Peters
▴ 230 • written 8.2 years ago by
csugai
• 0
1
vote
2
replies
1.4k
views
DMRcate error in extractCoords function
software error
DMRcate
extractRanges
updated 8.2 years ago by
Tim Peters
▴ 230 • written 8.2 years ago by
Xavier Pastor
▴ 10
0
votes
1
reply
1.2k
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 8.2 years ago by
Tim Peters
▴ 230 • written 8.2 years ago by
icobo
• 0
0
votes
9
replies
21k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 8.3 years ago by
Tim Peters
▴ 230 • written 8.4 years ago by
ew17
• 0
1
vote
15
replies
2.9k
views
DMRcate results meanpvals
dmrcate
updated 8.7 years ago by
Tim Peters
▴ 230 • written 8.8 years ago by
Giovanni Calice
▴ 160
0
votes
1
reply
1.2k
views
conflicts in chromosome number
DMRcate
updated 8.8 years ago by
Tim Peters
▴ 230 • written 8.8 years ago by
yuping.zhang
• 0
2
votes
2
replies
2.0k
views
DMRcate error: object 'annotated' not found
dmrcate
error
updated 9.3 years ago by
Tim Peters
▴ 230 • written 9.3 years ago by
Eric Smith
• 0
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