Showing : DMRcate • reset
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DMRcate pcutoff setting
EpicV2 DMRcate
5 weeks ago kitzhu • 0
3
votes
12
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3.4k
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How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 3 months ago by ▴ 200 • written 11 months ago by ▴ 10
3
votes
2
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752
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 5 months ago by 51k • written 6 months ago by • 0
1
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2
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1.5k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 6 months ago by ▴ 200 • written 20 months ago by ▴ 10
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0
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305
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DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
7 months ago Macsue • 0
1
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2
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1.6k
views
EPIC array hg38 annotation?
minfi DMRcate
9 months ago mycetes • 0
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0
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311
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What is the significance of DMR in DMRcate
DMRcate
9 months ago chuanjiao6 • 0
3
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2
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465
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Question about DMRcate
DMRcate dmrcate
9 months ago chuanjiao6 • 0
8
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7
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1.8k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 11 months ago by ▴ 30
0
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5
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890
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 12 months ago by 67k • written 12 months ago by ▴ 10
0
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1
reply
972
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DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 12 months ago by 4.1k • written 12 months ago by • 0
3
votes
4
replies
1.3k
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
14 months ago • updated 13 months ago Jitendra ▴ 10
0
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1
reply
744
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 15 months ago by ▴ 200 • written 15 months ago by • 0
2
votes
6
replies
1.4k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 19 months ago by ▴ 200 • written 19 months ago by • 0
6
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12
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2.3k
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Error when loading DMRcate
DMRcate
21 months ago Bazingastats • 0
0
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0
replies
861
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
21 months ago gilliangoobie • 0
2
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6
replies
2.2k
views
DMRcate
DMRcate R DMRcatedata Markdown
21 months ago yr542 • 0
0
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0
replies
1.1k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.9 years ago Ahdee ▴ 50
0
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1
reply
1.1k
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 3.0 years ago by 67k • written 3.0 years ago by ▴ 30
0
votes
2
replies
1.3k
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
3.1 years ago xie186 • 0
0
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6
replies
1.5k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 3.3 years ago by ▴ 20 • written 4.3 years ago by ▴ 10
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2
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1.7k
views
DMRcate extractRanges error
DMRcate
3.7 years ago macsue.jacques ▴ 10
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0
replies
889
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
4.0 years ago Mike ▴ 10
3
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4
replies
1.3k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 4.1 years ago by ▴ 200 • written 4.1 years ago by ▴ 10
0
votes
2
replies
937
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
4.3 years ago zh9118 • 0
4
votes
9
replies
3.4k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 3.0 years ago by ▴ 30 • written 4.4 years ago by ▴ 10
1
vote
8
replies
2.3k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 4.5 years ago by ▴ 200 • written 4.5 years ago by ▴ 40
3
votes
5
replies
1.7k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 5.1 years ago by 67k • written 5.1 years ago by ▴ 10
0
votes
3
replies
1.9k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 5.3 years ago by ▴ 200 • written 5.3 years ago by • 0
0
votes
2
replies
1.4k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 5.3 years ago by ▴ 290 • written 5.3 years ago by • 0
1
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3
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1.4k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 5.5 years ago by 67k • written 5.5 years ago by ▴ 10
2
votes
18
replies
5.5k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 6.4 years ago by • 0 • written 8.5 years ago by ▴ 160
0
votes
3
replies
1.9k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
6.4 years ago 574233829 • 0
2
votes
6
replies
2.2k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.5 years ago by ▴ 200 • written 6.5 years ago by • 0
0
votes
3
replies
2.1k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 7.4 years ago by ▴ 90 • written 7.4 years ago by • 0
1
vote
2
replies
1.8k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 7.5 years ago by ▴ 200 • written 7.5 years ago by • 0
1
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3
replies
1.7k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.6 years ago by 67k • written 7.6 years ago by ▴ 10
0
votes
11
replies
4.4k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 9 months ago by ▴ 200 • written 7.6 years ago by ★ 2.0k
1
vote
10
replies
3.4k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.7 years ago by ▴ 200 • written 7.7 years ago by ▴ 10
0
votes
1
reply
1.7k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 7.8 years ago by ▴ 200 • written 7.8 years ago by ▴ 10
0
votes
2
replies
1.6k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.8 years ago by ▴ 200 • written 7.8 years ago by • 0
1
vote
2
replies
1.3k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 7.8 years ago by ▴ 200 • written 7.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.9 years ago by ▴ 200 • written 7.9 years ago by • 0
0
votes
9
replies
20k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.9 years ago by ▴ 200 • written 8.1 years ago by • 0
1
vote
15
replies
2.6k
views
DMRcate results meanpvals
dmrcate
updated 8.4 years ago by ▴ 200 • written 8.4 years ago by ▴ 160
0
votes
1
reply
1.1k
views
conflicts in chromosome number
DMRcate
updated 8.4 years ago by ▴ 200 • written 8.4 years ago by • 0
2
votes
2
replies
1.9k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 8.9 years ago by ▴ 200 • written 8.9 years ago by • 0
0
votes
5
replies
2.5k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
9.0 years ago par.larsson • 0
2
votes
2
replies
2.7k
views
DMRcate cpg.annotate error
dmrcate design matrix
updated 9.0 years ago by ▴ 200 • written 9.0 years ago by ▴ 160
1
vote
1
reply
1.6k
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
updated 9.3 years ago by ▴ 370 • written 9.3 years ago by • 0
50 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
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DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
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> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
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