Bioconductor DMR

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2.2k

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DMR Methylation R Gviz

updated 15 months ago by Robert Ivanek ▴ 750 • written 3.8 years ago by ltzhou • 0

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924

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edgeR DMR

updated 2.1 years ago by Michael Love 43k • written 2.1 years ago by Fiona • 0

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2.9k

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dmr MethylationArrayData DMRcatedata

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by Julie • 0

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959

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Biseq Methylation DMP DMR RRBS

4.6 years ago i.s.castanho • 0

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927

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BiSeq testClusters error dmr

4.7 years ago akhaira • 0

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1.8k

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BiSeq DMR

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by akhaira • 0

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1.1k

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ChAMP DMR

updated 4.8 years ago by Yuan Tian ▴ 290 • written 4.8 years ago by olive8306 • 0

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1.2k

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bumphunter DMR methylation minfi

5.1 years ago i.s.brorson • 0

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1.1k

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DMR bumphunter EPIC chip

5.1 years ago i.s.brorson • 0

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2.0k

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ChAMP DMR champ.DMR

6.4 years ago yuabrahamliu • 0

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879

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methylsig no replicates dmr

6.6 years ago nilaycan • 0

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1.7k

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bumphunter DMR doparallel multicore

updated 19 months ago by Alessandro • 0 • written 6.8 years ago by arce.domingo.1407 • 0

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1.8k

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dmrseq dmr dmrs bisulfite methylation

updated 7.0 years ago by keegan ▴ 60 • written 7.1 years ago by l.kremer • 0

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1.5k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Ellen O • 0

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1.8k

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dmrcate dmr analysis dmr

updated 8.1 years ago by Tim Peters ▴ 230 • written 8.1 years ago by alexandria.andrayas ▴ 10

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4.9k

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bumphunter DMR DMR analysis minfi bioconductor

updated 8.2 years ago by rafa ▴ 60 • written 8.2 years ago by chelsey.ju • 0

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4.3k

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bsseq dmr ttest pvalue

updated 9.1 years ago by James W. MacDonald 68k • written 9.1 years ago by enricoferrero ▴ 680

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1.9k

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methylation linear model dmr bsseq biseq

9.2 years ago enricoferrero ▴ 680

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2.9k

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dmr methylation deseq2 bsseq biseq

updated 9.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.4 years ago by enricoferrero ▴ 680

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1.5k

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ChAMP minfi DMR dmr analysis lasso

9.4 years ago AST ▴ 60

20 results • Page 1 of 1

Recent ...

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Votes

A: What is the "linear model" part used for in Limma?

Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

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