Bioconductor DMR

Showing : DMR • reset

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1.5k

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DMR Methylation R Gviz

updated 7 months ago by Robert Ivanek ▴ 730 • written 3.2 years ago by ltzhou • 0

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581

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edgeR DMR

updated 17 months ago by Michael Love 42k • written 17 months ago by Fiona • 0

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2.0k

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dmr MethylationArrayData DMRcatedata

updated 3.7 years ago by James W. MacDonald 66k • written 3.7 years ago by Julie • 0

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778

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Biseq Methylation DMP DMR RRBS

4.0 years ago i.s.castanho • 0

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765

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BiSeq testClusters error dmr

4.0 years ago akhaira • 0

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1.3k

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BiSeq DMR

updated 4.0 years ago by James W. MacDonald 66k • written 4.0 years ago by akhaira • 0

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842

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ChAMP DMR

updated 4.1 years ago by Yuan Tian ▴ 290 • written 4.1 years ago by olive8306 • 0

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952

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bumphunter DMR methylation minfi

4.4 years ago i.s.brorson • 0

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882

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DMR bumphunter EPIC chip

4.4 years ago i.s.brorson • 0

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1.7k

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ChAMP DMR champ.DMR

5.7 years ago yuabrahamliu • 0

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738

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methylsig no replicates dmr

6.0 years ago nilaycan • 0

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1.5k

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bumphunter DMR doparallel multicore

updated 11 months ago by Alessandro • 0 • written 6.2 years ago by arce.domingo.1407 • 0

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.4 years ago by keegan ▴ 60 • written 6.4 years ago by l.kremer • 0

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1.3k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by Ellen O • 0

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1.5k

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dmrcate dmr analysis dmr

updated 7.4 years ago by Tim Peters ▴ 180 • written 7.4 years ago by alexandria.andrayas ▴ 10

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4.4k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.5 years ago by rafa ▴ 60 • written 7.5 years ago by chelsey.ju • 0

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3.7k

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bsseq dmr ttest pvalue

updated 8.4 years ago by James W. MacDonald 66k • written 8.4 years ago by enricoferrero ▴ 660

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1.7k

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methylation linear model dmr bsseq biseq

8.6 years ago enricoferrero ▴ 660

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2.6k

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dmr methylation deseq2 bsseq biseq

updated 8.7 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.7 years ago by enricoferrero ▴ 660

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1.4k

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ChAMP minfi DMR dmr analysis lasso

8.7 years ago AST ▴ 60

20 results • Page 1 of 1

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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k

No, this is a contrast of estimated coefficient (e.g. the Wald test).

Comment: Ranking the GSEA Results by Michael Love 42k

Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…

Comment: Ranking the GSEA Results by V_Vibes • 0

I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…

Comment: Ranking the GSEA Results by V_Vibes • 0

The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…

Votes

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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