Bioconductor DGElist

Showing : DGElist • reset

votes

replies

522

views

DGEList edgeR

12 months ago prity6459 • 0

votes

replies

873

views

edgeR Bioconductor Dseq2 dgelist

updated 2.4 years ago by Gordon Smyth 52k • written 2.4 years ago by Fiona • 0

vote

1.2k

views

factors edgeR setup DGELIst

updated 4.0 years ago by Gordon Smyth 52k • written 4.0 years ago by Alex • 0

votes

replies

2.3k

views

edger DGElist

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by naser.sadri • 0

votes

replies

2.1k

views

dgelist edger RnaSeqGeneEdgeRQL

updated 6.7 years ago by Gordon Smyth 52k • written 6.7 years ago by Kevin • 0

vote

replies

2.7k

views

edgeR summarizedexperiment dgelist

7.0 years ago aljoscha.leusmann • 0

votes

replies

1.2k

views

tree bootstrap dgelist plotmds

7.1 years ago Larry K. • 0

votes

2.6k

views

edger dgelist NA egsea

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by belmore • 0

votes

replies

4.3k

views

edger DGEList org.hs.eg.db gene annotation

updated 3.6 years ago by IIart.hubII • 0 • written 7.4 years ago by svlachavas ▴ 840

votes

replies

3.7k

views

egder dgelist group rnaseq

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by fawazfebin ▴ 60

votes

replies

3.9k

views

DGElist filter edgeR

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by alakatos ▴ 130

votes

replies

3.0k

views

edger raw reads TMM normalised values DGEList differential gene expression

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by benedict.ng ▴ 30

votes

replies

7.4k

views

edger subsetting dgelist

updated 8.8 years ago by Gordon Smyth 52k • written 8.8 years ago by mnaymik ▴ 10

vote

replies

21k

views

edgeR row.names DGEList

10.2 years ago ccheung • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

Awards • All

Great Question to inzirio ▴ 10