Bioconductor DGEList

Showing : DGEList • reset

votes

replies

478

views

DGEList edgeR

11 months ago prity6459 • 0

votes

replies

856

views

edgeR Bioconductor Dseq2 dgelist

updated 2.3 years ago by Gordon Smyth 52k • written 2.3 years ago by Fiona • 0

vote

1.2k

views

factors edgeR setup DGELIst

updated 3.9 years ago by Gordon Smyth 52k • written 3.9 years ago by Alex • 0

votes

replies

2.3k

views

edger DGElist

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by naser.sadri • 0

votes

replies

2.0k

views

dgelist edger RnaSeqGeneEdgeRQL

updated 6.7 years ago by Gordon Smyth 52k • written 6.7 years ago by Kevin • 0

vote

replies

2.6k

views

edgeR summarizedexperiment dgelist

7.0 years ago aljoscha.leusmann • 0

votes

replies

1.1k

views

tree bootstrap dgelist plotmds

7.1 years ago Larry K. • 0

votes

2.6k

views

edger dgelist NA egsea

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by belmore • 0

votes

replies

4.2k

views

edger DGEList org.hs.eg.db gene annotation

updated 3.5 years ago by IIart.hubII • 0 • written 7.3 years ago by svlachavas ▴ 840

votes

replies

3.6k

views

egder dgelist group rnaseq

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by fawazfebin ▴ 60

votes

replies

3.8k

views

DGElist filter edgeR

updated 7.7 years ago by Gordon Smyth 52k • written 7.8 years ago by alakatos ▴ 130

votes

replies

3.0k

views

edger raw reads TMM normalised values DGEList differential gene expression

updated 8.6 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by benedict.ng ▴ 30

votes

replies

7.4k

views

edger subsetting dgelist

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by mnaymik ▴ 10

vote

replies

21k

views

edgeR row.names DGEList

10.2 years ago ccheung • 0

14 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

what the test method for enrichGO in clusterProfiler?

Awards • All