Bioconductor DGELIst

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402

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DGEList edgeR

8 months ago prity6459 • 0

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799

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edgeR Bioconductor Dseq2 dgelist

updated 2.0 years ago by Gordon Smyth 52k • written 2.0 years ago by Fiona • 0

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1.1k

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factors edgeR setup DGELIst

updated 3.6 years ago by Gordon Smyth 52k • written 3.6 years ago by Alex • 0

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2.1k

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edger DGElist

updated 5.7 years ago by Gordon Smyth 52k • written 5.7 years ago by naser.sadri • 0

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1.9k

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dgelist edger RnaSeqGeneEdgeRQL

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by Kevin • 0

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2.4k

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edgeR summarizedexperiment dgelist

6.7 years ago aljoscha.leusmann • 0

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1.1k

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tree bootstrap dgelist plotmds

6.8 years ago Larry K. • 0

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2.5k

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edger dgelist NA egsea

updated 6.8 years ago by Gordon Smyth 52k • written 6.8 years ago by belmore • 0

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4.0k

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edger DGEList org.hs.eg.db gene annotation

updated 3.3 years ago by IIart.hubII • 0 • written 7.1 years ago by svlachavas ▴ 840

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3.5k

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egder dgelist group rnaseq

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by fawazfebin ▴ 60

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3.6k

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DGElist filter edgeR

updated 7.5 years ago by Gordon Smyth 52k • written 7.5 years ago by alakatos ▴ 130

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2.8k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 8.4 years ago by Steve Lianoglou ★ 13k • written 8.4 years ago by benedict.ng ▴ 30

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7.1k

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edger subsetting dgelist

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by mnaymik ▴ 10

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21k

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edgeR row.names DGEList

9.9 years ago ccheung • 0

14 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40