Bioconductor DESeq2

Showing : DESeq2 • reset

votes

replies

209

views

DESeq2 timecoursedata GeneExpression

updated 13 hours ago by ATpoint ★ 4.1k • written 1 day ago by pangtaihin • 0

votes

replies

views

DESeq2 DifferentialExpression

updated 1 day ago by Michael Love 42k • written 2 days ago by Kasper • 0

votes

views

DESeq2 normalization Normalization acrossspecies

updated 2 days ago by Michael Love 42k • written 3 days ago by piemmea • 0

votes

replies

457

views

DESeq2 pcaExplorer

updated 2 days ago by BioinfGuru ▴ 30 • written 3 days ago by Eric Katagirya • 0

vote

replies

133

views

DESeq2 eigencorplot PCAtools

3 days ago • updated 7 hours ago BioinfGuru ▴ 30

votes

151

views

DESeq2 DifferentialExpression

updated 6 days ago by ATpoint ★ 4.1k • written 6 days ago by sajadahmad41454 • 0

votes

replies

352

views

DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation

8 days ago • updated 5 days ago sajadahmad41454 • 0

votes

replies

1.5k

views

DESeq2 SpikeIn Normalization

updated 6 days ago by maria.soler • 0 • written 15 months ago by kalavattam ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

Votes

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

Awards • All