Bioconductor Cytoscape

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Cytoscape RCy3 RCy

updated 13 months ago by alex.pico ▴ 30 • written 14 months ago by David R ▴ 90

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1.9k

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Cytoscape RCy3 Networkvisualization WGCNA

21 months ago Ortega-C ▴ 10

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1.2k

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Cytoscape Heatmap heatmaps WGCNA

2.0 years ago gianni.drm • 0

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942

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RCy3 Cytoscape R Newick Bioconductor

updated 4.2 years ago by alex.pico ▴ 30 • written 4.6 years ago by ellisjc • 0

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1.7k

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RCy3 Cytoscape Rgraphviz GOstats

5.8 years ago Matthew Thornton ▴ 380

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2.1k

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microarray bioconductor cytoscape mapfromtranscripts

6.3 years ago lm795 ▴ 10

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1.3k

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gene expression network cytoscape

7.1 years ago torgeirous • 0

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9.7k

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wgcna cytoscape

updated 7.1 years ago by harelarik ▴ 60 • written 7.8 years ago by 2323982403 ▴ 60

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1.5k

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WGCNA network visualization external software cytoscape

updated 7.4 years ago by Peter Langfelder ★ 3.0k • written 7.4 years ago by je.maxfield • 0

9 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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