Showing : Cytoscape • reset
1
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449
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 11 months ago by ▴ 30 • written 12 months ago by ▴ 90
3
votes
7
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1.8k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
19 months ago Ortega-C ▴ 10
0
votes
0
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1.2k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
22 months ago gianni.drm • 0
0
votes
1
reply
904
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.0 years ago by ▴ 30 • written 4.4 years ago by • 0
3
votes
4
replies
1.6k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.6 years ago Matthew Thornton ▴ 380
1
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0
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2.0k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.2 years ago lm795 ▴ 10
0
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0
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1.2k
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Help with generating network from gene expression data
gene expression network cytoscape
6.9 years ago torgeirous • 0
6
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8
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9.4k
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WGCNA export to cytoscape
wgcna cytoscape
updated 7.0 years ago by ▴ 60 • written 7.6 years ago by ▴ 60
0
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1
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1.5k
views
WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by • 0
9 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
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C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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