Bioconductor CopywriteR

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567

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CopywriteR CopyhelpeR

9 months ago • updated 8 months ago fer_talavera • 0

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721

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CopywriteR

updated 8 months ago by fer_talavera • 0 • written 3.2 years ago by Joshua • 0

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1.1k

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copywriter cnv

updated 4.7 years ago by oscarkrijgsman ▴ 20 • written 4.7 years ago by Ram ▴ 220

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1.1k

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copywriter copynumber

updated 6.3 years ago by t.kuilman ▴ 170 • written 6.3 years ago by magdaaverte • 0

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2.4k

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s4vectors copywriter

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by TriS ▴ 200

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bioconductor biocparallel copywriter

updated 7.5 years ago by Martin Morgan 25k • written 7.5 years ago by genomic8328 ▴ 10

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1.3k

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copywriter

updated 7.8 years ago by t.kuilman ▴ 170 • written 7.8 years ago by filipzembol • 0

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1.8k

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copynumber cnvtools cnv copywriteR

updated 8.4 years ago by t.kuilman ▴ 170 • written 8.4 years ago by ahinsahr11 • 0

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1.6k

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CopywriteR

8.5 years ago Tom ▴ 10

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1.6k

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copywriter bam

updated 8.6 years ago by t.kuilman ▴ 170 • written 8.6 years ago by thestaroceanster • 0

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4.2k

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copywriter

updated 8.8 years ago by t.kuilman ▴ 170 • written 8.8 years ago by jcarter • 0

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2.6k

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copywriter dnacopy

updated 8.8 years ago by t.kuilman ▴ 170 • written 8.8 years ago by jcarter • 0

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copywriter

8.9 years ago MatthewGField ▴ 10

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2.9k

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CopywriteR copy number

updated 8.9 years ago by t.kuilman ▴ 170 • written 8.9 years ago by smcnulty • 0

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2.3k

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copywriter slurm openMPI

updated 8.9 years ago by t.kuilman ▴ 170 • written 8.9 years ago by smcnulty • 0

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1.5k

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copywriter bin size targeted sequencing

updated 8.9 years ago by t.kuilman ▴ 170 • written 8.9 years ago by sshung • 0

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1.4k

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CopywriteR

updated 9.0 years ago by t.kuilman ▴ 170 • written 9.0 years ago by Felix • 0

17 results • Page 1 of 1

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Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

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A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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