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News: Bioconductor Course, Kenya 2025: Applications Open!
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News: EuroBioC2023 abstract submission closing soon!
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News: Announcing the GBCC2025 Logo Design Contest!
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3 months ago Maria Doyle ▴ 100
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
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4 months ago Maria Doyle ▴ 100
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 100
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
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News: BioCAsia 2024 Registration Now Open!
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5 months ago Maria Doyle ▴ 100
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BioCAsia 2024 Abstract Deadline - August 26th
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5 months ago Maria Doyle ▴ 100
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News: EuroBioC Updates: Important Deadlines
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5 months ago Maria Doyle ▴ 100
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301
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
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5 months ago Maria Doyle ▴ 100
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News: EuroBioC2024 Carpentries workshops Sep 2-3
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6 months ago Maria Doyle ▴ 100
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News: BioC2024 in-person registration closes soon (July 10)
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6 months ago Maria Doyle ▴ 100
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EuroBioC2024 Registration is Open!
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8 months ago Maria Doyle ▴ 100
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
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8 months ago Maria Doyle ▴ 100
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News: BioC2024 deadlines approaching
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9 months ago Maria Doyle ▴ 100
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News: BioC2024 registration is now open!
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11 months ago Maria Doyle ▴ 100
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691
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News: Bioconductor.org website new design - We Need Your Input!
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18 months ago Maria Doyle ▴ 100
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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20 months ago Maria Doyle ▴ 100
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828
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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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21 months ago Maria Doyle ▴ 100
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
Training Bioconductor Event Community Tutorial
21 months ago Maria Doyle ▴ 100
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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21 months ago Maria Doyle ▴ 100
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: EuroBioC2023 abstract submission is open!
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News: Bioconductor call for events!
Bioconductor events community
23 months ago Maria Doyle ▴ 100
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
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News: Seeking members for BioC2023 organizing committee
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2.0 years ago Maria Doyle ▴ 100
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816
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News: Translation Hackathon (community event) announcement
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2.6 years ago kozo.nishida • 0
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Job: Bioconductor Community Manager
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2.7 years ago • updated 2.6 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board -- Deadline this Friday February 25
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2.9 years ago shepherl 4.1k
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News: Join the Bioconductor Community Advisory Board
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3.0 years ago shepherl 4.1k
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News: Call for Community Volunteered Package Reviewers
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3.6 years ago • updated 3.5 years ago shepherl 4.1k
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News: Nominations for Bioconductor Technical Advisory Board are open
community Bioconductor
3.7 years ago Charlotte Soneson ▴ 170
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1.0k
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News: Community engagement, outreach, and diversity award
awards bioc2021 recognition community Bioconductor
3.7 years ago shepherl 4.1k
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News: New Bioconductor Community Advisory Board Members for 2021
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3.8 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
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updated 3.9 years ago by • 0 • written 4.0 years ago by ▴ 1000
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News: Community engagement and outreach award
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News: Bioconductor Community Advisory Board Members
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4.8 years ago Matthew Ritchie ▴ 1000
7
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News: Bioconductor Community Advisory Board Nominees
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updated 5.0 years ago by 21k • written 5.0 years ago by ▴ 1000
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900
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News: Results: Bioconductor Community Survey
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5.0 years ago Matthew Ritchie ▴ 1000
3
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News: Bioconductor Community Survey
feedback community News
5.3 years ago Matthew Ritchie ▴ 1000
41 results • Page 1 of 1
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Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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