Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Coldata
•
reset
0
votes
6
replies
686
views
Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 6 months ago by
swbarnes2
★ 1.4k • written 6 months ago by
arfranco
▴ 130
0
votes
2
replies
809
views
Heat Map
ColData
pheatmap
DESeq2
written 17 months ago by
dania.khalid
• 0
0
votes
1
reply
1.5k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 21 months ago by
Basti
▴ 780 • written 21 months ago by
achoppe
▴ 10
1
vote
0
replies
714
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.5 years ago
akhaira
• 0
2
votes
2
replies
1.8k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
ariel
▴ 20
4
votes
8
replies
46k
views
What is colData? How do I make one?
deseq2
coldata
updated 6.0 years ago by
swbarnes2
★ 1.4k • written 6.0 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.6k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 6.1 years ago by
Valerie Obenchain
★ 6.8k • written 6.2 years ago by
lvclark
▴ 10
0
votes
8
replies
4.1k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 3 months ago by
Michael Love
42k • written 6.3 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.7k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 7.0 years ago by
Levi Waldron
★ 1.1k • written 7.0 years ago by
Lluís Revilla Sancho
▴ 760
9 results • Page
1 of 1
Recent ...
Replies
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
Awards
• All
Scholar
to
Haibo Liu
▴ 20
Popular Question
to
Talip
▴ 10
Popular Question
to
alexandre.blais
▴ 50
Popular Question
to
Fred Hutch (Recruiting)
▴ 40
Scholar
to
Gordon Smyth
51k
Locations
• All
WEHI, Melbourne, Australia,
19 minutes ago
Hong Kong,
32 minutes ago
The city by the bay,
56 minutes ago
United Kingdom,
1 hour ago
United States,
2 hours ago
Traffic: 586 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6