Bioconductor Coldata

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790

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DESeq2 design coldata

updated 9 months ago by swbarnes2 ★ 1.4k • written 9 months ago by arfranco ▴ 130

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906

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ColData pheatmap DESeq2

written 19 months ago by dania.khalid • 0

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1.6k

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SingleCellExperiment colData rename

updated 24 months ago by Basti ▴ 780 • written 24 months ago by achoppe ▴ 10

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765

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BiSeq Coldata

4.7 years ago akhaira • 0

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1.9k

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deseq2 levels factor colData

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by ariel ▴ 20

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47k

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deseq2 coldata

updated 6.2 years ago by swbarnes2 ★ 1.4k • written 6.2 years ago by mjrarcher ▴ 10

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3.7k

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variantannotation coldata

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by lvclark ▴ 10

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4.3k

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deseq2 coldata NA

updated 5 months ago by Michael Love 43k • written 6.5 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.2 years ago by Levi Waldron ★ 1.1k • written 7.2 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0

@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…

Comment: error in ChAMP loading file by 81becky • 0

hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…

Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Popular Question to Vincent J. Carey, Jr. 6.7k

Teacher to Gordon Smyth 52k

Scholar to James W. MacDonald 68k