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Coldata
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0
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6
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418
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 8 weeks ago by
swbarnes2
★ 1.4k • written 9 weeks ago by
arfranco
▴ 130
0
votes
2
replies
621
views
Heat Map
ColData
pheatmap
DESeq2
written 12 months ago by
dania.khalid
• 0
0
votes
1
reply
1.2k
views
Rename colData column
SingleCellExperiment
colData
rename
updated 16 months ago by
Basti
▴ 780 • written 16 months ago by
achoppe
▴ 10
1
vote
0
replies
617
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.1 years ago
akhaira
• 0
2
votes
2
replies
1.5k
views
How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.4 years ago by
Michael Love
42k • written 5.4 years ago by
ariel
▴ 20
4
votes
8
replies
43k
views
What is colData? How do I make one?
deseq2
coldata
updated 5.6 years ago by
swbarnes2
★ 1.4k • written 5.6 years ago by
mjrarcher
▴ 10
1
vote
7
replies
3.3k
views
Data from ##SAMPLE lines in VCF?
variantannotation
coldata
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.8 years ago by
lvclark
▴ 10
0
votes
6
replies
3.7k
views
DESeq2: handling NA values in colData
deseq2
coldata
NA
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
t.kuilman
▴ 170
0
votes
3
replies
1.5k
views
How to create the colData for a complex experiment
multiassayexperiment
colData
updated 6.6 years ago by
Levi Waldron
★ 1.1k • written 6.6 years ago by
Lluís Revilla Sancho
▴ 730
9 results • Page
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Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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