Bioconductor ColData

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919

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DESeq2 design coldata

updated 12 months ago by swbarnes2 ★ 1.4k • written 12 months ago by arfranco ▴ 130

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1.1k

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ColData pheatmap DESeq2

written 22 months ago by dania.khalid • 0

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1.8k

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SingleCellExperiment colData rename

updated 2.2 years ago by Basti ▴ 780 • written 2.2 years ago by achoppe ▴ 10

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818

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BiSeq Coldata

4.9 years ago akhaira • 0

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2.0k

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deseq2 levels factor colData

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by ariel ▴ 20

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49k

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deseq2 coldata

updated 6.5 years ago by swbarnes2 ★ 1.4k • written 6.5 years ago by mjrarcher ▴ 10

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4.0k

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variantannotation coldata

updated 6.6 years ago by Valerie Obenchain ★ 6.8k • written 6.6 years ago by lvclark ▴ 10

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4.5k

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deseq2 coldata NA

updated 8 months ago by Michael Love 43k • written 6.7 years ago by t.kuilman ▴ 170

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1.8k

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multiassayexperiment colData

updated 7.4 years ago by Levi Waldron ★ 1.1k • written 7.4 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: Unable to install a forged BSgenome package by JABEZ RAJU • 0

install.packages("E:/PhD data/RNAseq/TSS/BSgenome.Hnudivirus-2.NCBI.ViralProj14215", repos = NULL, type = "source") Installing package into…

Comment: DESeq2 with proteomics data by wook2014 • 0

You may need to do NA imputation before give the data to DEseq2 and there are study on DEseq2 performance on proteomics data, like :https:/…

Answer: Unable to install a forged BSgenome package by James W. MacDonald 68k

Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k

Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Votes

Answer: Unable to install a forged BSgenome package

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

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Popular Question to caroline.zanchi • 0