Bioconductor ColData

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902

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DESeq2 design coldata

updated 11 months ago by swbarnes2 ★ 1.4k • written 11 months ago by arfranco ▴ 130

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ColData pheatmap DESeq2

written 21 months ago by dania.khalid • 0

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1.8k

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SingleCellExperiment colData rename

updated 2.1 years ago by Basti ▴ 780 • written 2.1 years ago by achoppe ▴ 10

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806

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BiSeq Coldata

4.9 years ago akhaira • 0

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deseq2 levels factor colData

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by ariel ▴ 20

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48k

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deseq2 coldata

updated 6.4 years ago by swbarnes2 ★ 1.4k • written 6.4 years ago by mjrarcher ▴ 10

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variantannotation coldata

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by lvclark ▴ 10

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deseq2 coldata NA

updated 7 months ago by Michael Love 43k • written 6.7 years ago by t.kuilman ▴ 170

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1.8k

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multiassayexperiment colData

updated 7.3 years ago by Levi Waldron ★ 1.1k • written 7.3 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

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Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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