Bioconductor ColData

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768

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DESeq2 design coldata

updated 8 months ago by swbarnes2 ★ 1.4k • written 8 months ago by arfranco ▴ 130

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875

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ColData pheatmap DESeq2

written 19 months ago by dania.khalid • 0

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1.6k

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SingleCellExperiment colData rename

updated 23 months ago by Basti ▴ 780 • written 23 months ago by achoppe ▴ 10

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753

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BiSeq Coldata

4.7 years ago akhaira • 0

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1.9k

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deseq2 levels factor colData

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by ariel ▴ 20

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47k

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deseq2 coldata

updated 6.2 years ago by swbarnes2 ★ 1.4k • written 6.2 years ago by mjrarcher ▴ 10

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3.7k

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variantannotation coldata

updated 6.3 years ago by Valerie Obenchain ★ 6.8k • written 6.3 years ago by lvclark ▴ 10

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4.3k

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deseq2 coldata NA

updated 5 months ago by Michael Love 43k • written 6.5 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.1 years ago by Levi Waldron ★ 1.1k • written 7.1 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

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Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

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Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750