Bioconductor ColData

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733

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DESeq2 design coldata

updated 7 months ago by swbarnes2 ★ 1.4k • written 7 months ago by arfranco ▴ 130

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843

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ColData pheatmap DESeq2

written 18 months ago by dania.khalid • 0

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1.5k

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SingleCellExperiment colData rename

updated 22 months ago by Basti ▴ 780 • written 22 months ago by achoppe ▴ 10

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734

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BiSeq Coldata

4.6 years ago akhaira • 0

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1.8k

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deseq2 levels factor colData

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by ariel ▴ 20

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46k

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deseq2 coldata

updated 6.1 years ago by swbarnes2 ★ 1.4k • written 6.1 years ago by mjrarcher ▴ 10

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3.6k

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variantannotation coldata

updated 6.2 years ago by Valerie Obenchain ★ 6.8k • written 6.3 years ago by lvclark ▴ 10

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4.2k

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deseq2 coldata NA

updated 4 months ago by Michael Love 43k • written 6.4 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.0 years ago by Levi Waldron ★ 1.1k • written 7.1 years ago by Lluís Revilla Sancho ▴ 760

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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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