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Recent ...
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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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Luca
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Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0
![enter image description here][1]…
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If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…
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I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…
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If you check the underlying code a bit you find that there is a file with data sources:
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modes_file <- system.file("extdata", "metadat…
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That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…
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