Bioconductor ChIPSeqData

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184

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ChIPSeqData genomes ChIPSeq

3 months ago user_bioinfo • 0

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313

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ChIPSeqData interact GenomicRanges HiC

6 months ago user_bioinfo • 0

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333

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DiffBind ChIPSeqData

9 months ago Dinesh • 0

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594

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DiffBind ChIPSeqData DESeq2

updated 9 months ago by Michael Love 43k • written 9 months ago by marcusn ▴ 10

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3.7k

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Genome bwamem ChIPSeqData index

updated 24 months ago by ATpoint ★ 4.7k • written 24 months ago by Maka • 0

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1.1k

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ChipSeq ChIPSeqData chipseqDB

2.2 years ago stacy.genovese • 0

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1.4k

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GeneExpression ChIPSeqData

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by michela ▴ 20

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2.8k

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DiffBind ChIPSeqData

updated 2.7 years ago by millerh1 ▴ 10 • written 3.2 years ago by sfpacman • 0

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734

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ChIPSeqData

3.3 years ago tom.dean • 0

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2.3k

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ChIPseeker ChIPSeqData

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by Morris ▴ 10

10 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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