Bioconductor ChIPSeqData

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136

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ChIPSeqData genomes ChIPSeq

6 weeks ago user_bioinfo • 0

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263

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ChIPSeqData interact GenomicRanges HiC

4 months ago user_bioinfo • 0

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292

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DiffBind ChIPSeqData

7 months ago Dinesh • 0

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492

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DiffBind ChIPSeqData DESeq2

updated 7 months ago by Michael Love 43k • written 7 months ago by marcusn ▴ 10

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3.3k

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Genome bwamem ChIPSeqData index

updated 22 months ago by ATpoint ★ 4.6k • written 22 months ago by Maka • 0

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1.0k

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ChipSeq ChIPSeqData chipseqDB

2.1 years ago stacy.genovese • 0

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1.3k

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GeneExpression ChIPSeqData

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by michela ▴ 20

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2.7k

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DiffBind ChIPSeqData

updated 2.5 years ago by millerh1 ▴ 10 • written 3.1 years ago by sfpacman • 0

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703

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ChIPSeqData

3.1 years ago tom.dean • 0

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2.1k

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ChIPseeker ChIPSeqData

updated 4.1 years ago by James W. MacDonald 67k • written 4.1 years ago by Morris ▴ 10

10 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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