Bioconductor ChIPSeqData

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ChIPSeqData genomes ChIPSeq

1 day ago user_bioinfo • 0

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224

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ChIPSeqData interact GenomicRanges HiC

12 weeks ago user_bioinfo • 0

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264

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DiffBind ChIPSeqData

6 months ago Dinesh • 0

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409

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DiffBind ChIPSeqData DESeq2

updated 6 months ago by Michael Love 42k • written 6 months ago by marcusn • 0

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3.0k

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Genome bwamem ChIPSeqData index

updated 20 months ago by ATpoint ★ 4.5k • written 20 months ago by Maka • 0

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993

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ChipSeq ChIPSeqData chipseqDB

23 months ago stacy.genovese • 0

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1.3k

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GeneExpression ChIPSeqData

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by michela ▴ 20

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2.6k

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DiffBind ChIPSeqData

updated 2.4 years ago by millerh1 ▴ 10 • written 2.9 years ago by sfpacman • 0

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659

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ChIPSeqData

3.0 years ago tom.dean • 0

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2.0k

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ChIPseeker ChIPSeqData

updated 4.0 years ago by James W. MacDonald 67k • written 4.0 years ago by Morris ▴ 10

10 results • Page 1 of 1

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Yes, I understand the implications of replacing the `OrgDb` packages in release. Maybe an upload to the annotationHub or GitHub could be an…

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A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

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Popular Question to Mikhail Dozmorov ▴ 30