Bioconductor Bugs

Showing : Bugs • reset

votes

replies

2.0k

views

bugs limma

2.6 years ago Zhenyu • 0

votes

replies

2.0k

views

arrayexpress affy bugs

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Ed Siefker ▴ 230

votes

replies

3.1k

views

GSVA bug gsva bugs

updated 7.6 years ago by Robert Castelo ★ 3.4k • written 7.6 years ago by JasonL_Weirather ▴ 10

votes

1.3k

views

DiffBind bugs

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by jeremydt • 0

votes

replies

1.8k

views

txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by wcstcyx ▴ 30

votes

replies

1.6k

views

annotationhub bugs encode bed

8.4 years ago wcstcyx ▴ 30

votes

replies

1.2k

views

bugs impute

8.6 years ago Shicheng Guo • 0

votes

replies

1.9k

views

software error bugs deseq2

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by john.hu • 0

votes

replies

1.7k

views

monocle bugs

9.4 years ago wanghao1993333 • 0

votes

replies

1.9k

views

ggbio bugs tracks autoplot

10.2 years ago cooketho • 0

votes

replies

1.7k

views

arrayqualitymetrics bugs error

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by daugherty_a • 0

votes

replies

2.3k

views

Bugs deseq2

updated 10.6 years ago by Michael Love 43k • written 10.6 years ago by lmf.bill@gmail.com ▴ 10

votes

replies

1.6k

views

Bugs ggbio

10.6 years ago Anne Deslattes Mays ▴ 30

13 results • Page 1 of 1

Recent ...

Replies

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much - this is very clear!

Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov by Michael Love 43k

I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…

Answer: Differing results with DESeq2 by Michael Love 43k

hi, I just noticed this popped up on the support site. There are often questions about statistical design plans, and unfortunately I don…

Votes

Comment: edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

edgeR::cpm() results in negative values from raw counts of 0

Answer: edgeR::cpm() results in negative values from raw counts of 0

Awards • All