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News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
1 day ago Maria Doyle ▴ 100
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2
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854
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
updated 1 day ago by • 0 • written 24 months ago by ▴ 100
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3
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335
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batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
3 days ago • updated 1 day ago gaye.yilmaz • 0
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61
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Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
7 days ago Wolfgang Huber ★ 13k
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5
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531
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 3 days ago by 4.1k • written 9 days ago by • 0
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35
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News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
10 days ago Maria Doyle ▴ 100
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59
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News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
22 days ago Maria Doyle ▴ 100
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153
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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
24 days ago Maria Doyle ▴ 100
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1.2k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 22 months ago by ▴ 100
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5
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1.2k
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 8 weeks ago by • 0 • written 12 months ago by ▴ 100
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2
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316
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 7 weeks ago by • 0 • written 9 weeks ago by • 0
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347
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bioconductor packages on bioconda
Bioconductor
updated 12 weeks ago by 68k • written 12 weeks ago by • 0
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526
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
3 months ago Abiologist • 0
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1.9k
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Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 3 months ago by 4.1k • written 2.1 years ago by ▴ 50
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
3 months ago shepherl 4.1k
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241
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
3 months ago Maria Doyle ▴ 100
1
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3
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722
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 4 months ago by 68k • written 4 months ago by • 0
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239
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
4 months ago shepherl 4.1k
1
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2
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639
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 4 months ago by 43k • written 5 months ago by ▴ 10
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261
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
4 months ago Maria Doyle ▴ 100
1
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8
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729
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Can't post a question?
Bioconductor
updated 11 weeks ago by • 0 • written 5 months ago by • 0
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472
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How to read OSCA book?
BIOCON OSCA Bioconductor
5 months ago zr • 0
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472
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
5 months ago katja.danielzik • 0
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482
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concentration tables suitable as input for new packages?
Bioconductor
5 months ago katja.danielzik • 0
2
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582
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
5 months ago Maria Doyle ▴ 100
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888
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ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 5 months ago by ▴ 760 • written 5 months ago by • 0
0
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902
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
written 5 months ago by ▴ 100
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1
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1.0k
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Unable to install/use limma
limma Bioconductor
updated 5 months ago by 68k • written 5 months ago by • 0
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443
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Review process for delivering R packages
Bioconductor
5 months ago XFWu • 0
0
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1
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440
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
5 months ago Maria Doyle ▴ 100
1
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3
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1.0k
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 6 months ago by • 0
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416
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 5 months ago by ▴ 10 • written 6 months ago by ▴ 180
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316
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
6 months ago Maria Doyle ▴ 100
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368
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
6 months ago Maria Doyle ▴ 100
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Bioconductor Submission question
Bioconductor
6 months ago XFWu • 0
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300
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
6 months ago shepherl 4.1k
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314
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
6 months ago Maria Doyle ▴ 100
0
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4
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826
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
7 months ago • updated 6 months ago Jessica • 0
1
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583
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
7 months ago shepherl 4.1k
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2
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714
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Installing Bioconductor
Bioconductor
updated 7 months ago by ▴ 760 • written 7 months ago by • 0
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352
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
7 months ago Maria Doyle ▴ 100
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340
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
7 months ago Maria Doyle ▴ 100
0
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0
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416
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
7 months ago devarti.mahakalkar • 0
0
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599
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
7 months ago Abiologist • 0
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5.1k
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Unable to install the package "tissuesGeneExpression"
bioconductor
updated 7 months ago by • 0 • written 7.6 years ago by ▴ 10
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1
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470
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 8 months ago by 68k • written 8 months ago by • 0
4
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2
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970
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
8 months ago Rachael • 0
1
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5
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1.9k
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Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 8 months ago by ★ 4.7k • written 8 months ago by • 0
0
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370
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How to access the Bioconductor in Windows
Bioconductor
updated 8 months ago by ★ 4.7k • written 8 months ago by • 0
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326
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
8 months ago Maria Doyle ▴ 100
50 results • Page 1 of 1
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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA by pammelala304 • 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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