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1.5k
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 2 hours ago by • 0 • written 14 months ago by ▴ 100
0
votes
1
reply
560
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
updated 6 days ago by 4.1k • written 6 days ago by • 0
0
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1
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442
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News: List of Deprecated Packages for Bioc3.20
Release Devel Bioconductor
6 months ago • updated 20 days ago shepherl 4.1k
1
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4
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1.4k
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Package developing and interoperation with Bioconductor
Package Bioconductor
26 days ago • updated 25 days ago slizchap • 0
0
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0
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198
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News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
8 weeks ago Maria Doyle ▴ 100
0
votes
3
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1.0k
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
updated 11 days ago by • 0 • written 2.1 years ago by ▴ 100
0
votes
3
replies
442
views
batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
9 weeks ago • updated 8 weeks ago gaye.yilmaz • 0
0
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0
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183
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Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
9 weeks ago Wolfgang Huber ★ 13k
0
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5
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972
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 9 weeks ago by 4.1k • written 9 weeks ago by • 0
0
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0
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125
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News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
10 weeks ago Maria Doyle ▴ 100
0
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0
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115
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News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
11 weeks ago Maria Doyle ▴ 100
1
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0
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292
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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
12 weeks ago Maria Doyle ▴ 100
0
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3
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1.3k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 2.0 years ago by ▴ 100
0
votes
2
replies
407
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 3 months ago by • 0 • written 4 months ago by • 0
2
votes
1
reply
511
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bioconductor packages on bioconda
Bioconductor
updated 4 months ago by 68k • written 4 months ago by • 0
1
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3
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715
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
5 months ago Abiologist • 0
10
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7
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2.0k
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Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 5 months ago by 4.1k • written 2.2 years ago by ▴ 50
1
vote
0
replies
831
views
News: Bioconductor 3.20 is Released!
Bioconductor Release Software
5 months ago shepherl 4.1k
0
votes
0
replies
316
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
5 months ago Maria Doyle ▴ 100
1
vote
3
replies
893
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 6 months ago by 68k • written 6 months ago by • 0
1
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2
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787
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 6 months ago by 43k • written 7 months ago by ▴ 10
0
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0
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315
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
6 months ago Maria Doyle ▴ 100
2
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9
replies
1.4k
views
Can't post a question?
Bioconductor
updated 5 weeks ago by • 0 • written 7 months ago by • 0
2
votes
2
replies
556
views
How to read OSCA book?
BIOCON OSCA Bioconductor
7 months ago zr • 0
1
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2
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547
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
7 months ago katja.danielzik • 0
0
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3
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664
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concentration tables suitable as input for new packages?
Bioconductor
written 7 months ago by • 0
2
votes
0
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717
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
7 months ago Maria Doyle ▴ 100
0
votes
5
replies
1.1k
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 7 months ago by ▴ 760 • written 7 months ago by • 0
0
votes
1
reply
1.5k
views
News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
updated 20 days ago by • 0 • written 7 months ago by ▴ 100
0
votes
1
reply
1.5k
views
Unable to install/use limma
limma Bioconductor
updated 7 months ago by 68k • written 7 months ago by • 0
1
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2
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501
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Review process for delivering R packages
Bioconductor
7 months ago XFWu • 0
0
votes
1
reply
510
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
7 months ago Maria Doyle ▴ 100
1
vote
3
replies
1.2k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 8 months ago by • 0
0
votes
0
replies
479
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 7 months ago by ▴ 10 • written 8 months ago by ▴ 180
0
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0
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362
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
8 months ago Maria Doyle ▴ 100
0
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0
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437
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
8 months ago Maria Doyle ▴ 100
2
votes
4
replies
609
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Bioconductor Submission question
Bioconductor
8 months ago XFWu • 0
0
votes
0
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356
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
8 months ago shepherl 4.1k
0
votes
0
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360
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
8 months ago Maria Doyle ▴ 100
0
votes
4
replies
924
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
9 months ago • updated 8 months ago Jessica • 0
1
vote
0
replies
658
views
News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
9 months ago shepherl 4.1k
0
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2
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1.0k
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Installing Bioconductor
Bioconductor
updated 9 months ago by ▴ 760 • written 9 months ago by • 0
0
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0
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405
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
9 months ago Maria Doyle ▴ 100
0
votes
0
replies
399
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
9 months ago Maria Doyle ▴ 100
0
votes
0
replies
490
views
Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
9 months ago devarti.mahakalkar • 0
0
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3
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722
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
9 months ago Abiologist • 0
2
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2
replies
5.3k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 9 months ago by • 0 • written 7.8 years ago by ▴ 10
0
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1
reply
566
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 10 months ago by 68k • written 10 months ago by • 0
4
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2
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1.3k
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
10 months ago Rachael • 0
1
vote
5
replies
2.5k
views
Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 10 months ago by ★ 4.8k • written 10 months ago by • 0
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Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets by Gordon Smyth 52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much for the vis suggestion!
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much - I appreciate the mathematical explanation and link to Dr. Phipson's thesis!
Votes
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
Answer: edgeR::cpm() results in negative values from raw counts of 0
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