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News: List of Deprecated Packages for Bioc3.20
Release Devel Bioconductor
5 months ago • updated 9 hours ago shepherl 4.1k
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4
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1.3k
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Package developing and interoperation with Bioconductor
Package Bioconductor
6 days ago • updated 5 days ago slizchap • 0
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0
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141
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News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
5 weeks ago Maria Doyle ▴ 100
0
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3
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998
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
updated 27 days ago by • 0 • written 2.1 years ago by ▴ 100
0
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3
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417
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batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
6 weeks ago • updated 5 weeks ago gaye.yilmaz • 0
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152
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Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
6 weeks ago Wolfgang Huber ★ 13k
0
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5
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785
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 6 weeks ago by 4.1k • written 7 weeks ago by • 0
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0
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95
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News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
7 weeks ago Maria Doyle ▴ 100
0
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0
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97
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News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
8 weeks ago Maria Doyle ▴ 100
1
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0
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237
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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
9 weeks ago Maria Doyle ▴ 100
0
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3
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1.3k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 23 months ago by ▴ 100
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5
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1.4k
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 3 months ago by • 0 • written 13 months ago by ▴ 100
0
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2
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384
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 3 months ago by • 0 • written 3 months ago by • 0
2
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1
reply
434
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bioconductor packages on bioconda
Bioconductor
updated 4 months ago by 68k • written 4 months ago by • 0
1
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3
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628
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
4 months ago Abiologist • 0
10
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7
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2.0k
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Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 4 months ago by 4.1k • written 2.2 years ago by ▴ 50
1
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0
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761
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
5 months ago shepherl 4.1k
0
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0
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286
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
5 months ago Maria Doyle ▴ 100
1
vote
3
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846
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 5 months ago by 68k • written 5 months ago by • 0
1
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2
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740
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 6 months ago by 43k • written 6 months ago by ▴ 10
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293
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
6 months ago Maria Doyle ▴ 100
2
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9
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1.3k
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Can't post a question?
Bioconductor
updated 20 days ago by • 0 • written 6 months ago by • 0
2
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2
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520
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How to read OSCA book?
BIOCON OSCA Bioconductor
6 months ago zr • 0
1
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2
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522
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
6 months ago katja.danielzik • 0
0
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3
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642
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concentration tables suitable as input for new packages?
Bioconductor
written 6 months ago by • 0
2
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0
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667
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
6 months ago Maria Doyle ▴ 100
0
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5
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1.0k
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 6 months ago by ▴ 760 • written 6 months ago by • 0
0
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1
reply
1.0k
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
written 7 months ago by ▴ 100
0
votes
1
reply
1.3k
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Unable to install/use limma
limma Bioconductor
updated 7 months ago by 68k • written 7 months ago by • 0
1
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2
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482
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Review process for delivering R packages
Bioconductor
7 months ago XFWu • 0
0
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1
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493
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
7 months ago Maria Doyle ▴ 100
1
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3
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1.1k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 7 months ago by • 0
0
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0
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460
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 7 months ago by ▴ 10 • written 7 months ago by ▴ 180
0
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0
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348
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
7 months ago Maria Doyle ▴ 100
0
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0
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409
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
7 months ago Maria Doyle ▴ 100
2
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4
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593
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Bioconductor Submission question
Bioconductor
7 months ago XFWu • 0
0
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0
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335
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
7 months ago shepherl 4.1k
0
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0
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345
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
7 months ago Maria Doyle ▴ 100
0
votes
4
replies
895
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
8 months ago • updated 7 months ago Jessica • 0
1
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0
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623
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
8 months ago shepherl 4.1k
0
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2
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889
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Installing Bioconductor
Bioconductor
updated 8 months ago by ▴ 760 • written 8 months ago by • 0
0
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0
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386
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
8 months ago Maria Doyle ▴ 100
0
votes
0
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375
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
9 months ago Maria Doyle ▴ 100
0
votes
0
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458
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
9 months ago devarti.mahakalkar • 0
0
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3
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674
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
9 months ago Abiologist • 0
2
votes
2
replies
5.2k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 9 months ago by • 0 • written 7.7 years ago by ▴ 10
0
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1
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527
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 9 months ago by 68k • written 9 months ago by • 0
4
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2
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1.2k
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
9 months ago Rachael • 0
1
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5
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2.3k
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Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 10 months ago by ★ 4.8k • written 10 months ago by • 0
0
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1
reply
401
views
How to access the Bioconductor in Windows
Bioconductor
updated 10 months ago by ★ 4.8k • written 10 months ago by • 0
50 results • Page 1 of 1
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Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
You can use the `AnnotationHub` ``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% sna…
Answer: List of Deprecated Packages for Bioc3.20 by shepherl 4.1k
HTqPCR has been fixed and will be re-instated in 3.21
Comment: Question about using LRT test for time course experiments with DESeq2 by Rob • 0
Just to pick up on this thread as its really helpful for understanding the LRT test. The LRT test is given any genes that change within the…
Votes
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
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