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3
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1.2k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 21 months ago by ▴ 90
0
votes
5
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1.2k
views
News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 26 days ago by • 0 • written 11 months ago by ▴ 90
0
votes
2
replies
283
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 20 days ago by • 0 • written 5 weeks ago by • 0
2
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1
reply
284
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bioconductor packages on bioconda
Bioconductor
updated 8 weeks ago by 67k • written 8 weeks ago by • 0
1
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3
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454
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
9 weeks ago • updated 8 weeks ago Abiologist • 0
10
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7
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1.8k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 10 weeks ago by 4.1k • written 24 months ago by ▴ 50
1
vote
0
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519
views
News: Bioconductor 3.20 is Released!
Bioconductor Release Software
11 weeks ago shepherl 4.1k
0
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0
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199
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
12 weeks ago Maria Doyle ▴ 90
1
vote
3
replies
652
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 3 months ago by 67k • written 3 months ago by • 0
0
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0
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182
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
3 months ago • updated 12 weeks ago shepherl 4.1k
1
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2
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580
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 3 months ago by 43k • written 4 months ago by ▴ 10
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0
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228
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
3 months ago Maria Doyle ▴ 90
1
vote
8
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653
views
Can't post a question?
Bioconductor
updated 6 weeks ago by • 0 • written 3 months ago by • 0
2
votes
2
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428
views
How to read OSCA book?
BIOCON OSCA Bioconductor
4 months ago zr • 0
1
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2
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431
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
4 months ago katja.danielzik • 0
0
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2
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452
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concentration tables suitable as input for new packages?
Bioconductor
4 months ago katja.danielzik • 0
2
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0
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496
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 90
0
votes
5
replies
780
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 3 months ago by ▴ 760 • written 4 months ago by • 0
0
votes
1
reply
736
views
News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
written 4 months ago by ▴ 90
0
votes
1
reply
773
views
Unable to install/use limma
limma Bioconductor
updated 4 months ago by 67k • written 4 months ago by • 0
1
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2
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420
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Review process for delivering R packages
Bioconductor
4 months ago XFWu • 0
0
votes
1
reply
409
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
4 months ago Maria Doyle ▴ 90
1
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3
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884
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 5 months ago by • 0
0
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0
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379
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 4 months ago by ▴ 10 • written 5 months ago by ▴ 180
0
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0
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294
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
5 months ago Maria Doyle ▴ 90
0
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0
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333
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
5 months ago Maria Doyle ▴ 90
2
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4
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508
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Bioconductor Submission question
Bioconductor
5 months ago XFWu • 0
0
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0
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271
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
5 months ago shepherl 4.1k
0
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0
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290
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 90
0
votes
4
replies
765
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
6 months ago • updated 5 months ago Jessica • 0
1
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0
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547
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
5 months ago shepherl 4.1k
0
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2
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567
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Installing Bioconductor
Bioconductor
updated 6 months ago by ▴ 760 • written 6 months ago by • 0
0
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0
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319
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News: EuroBioC2024 Carpentries workshops Sep 2-3
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6 months ago Maria Doyle ▴ 90
0
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0
replies
313
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
6 months ago Maria Doyle ▴ 90
0
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0
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386
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Difference in Predictive component of PLS and OPLS Model
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6 months ago devarti.mahakalkar • 0
0
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3
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536
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
6 months ago Abiologist • 0
2
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2
replies
5.1k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 6 months ago by • 0 • written 7.5 years ago by ▴ 10
0
votes
1
reply
418
views
BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 6 months ago by 67k • written 6 months ago by • 0
4
votes
2
replies
870
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
7 months ago Rachael • 0
1
vote
5
replies
1.7k
views
Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 7 months ago by ★ 4.6k • written 7 months ago by • 0
0
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1
reply
344
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How to access the Bioconductor in Windows
Bioconductor
updated 7 months ago by ★ 4.6k • written 7 months ago by • 0
0
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0
replies
300
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
7 months ago Maria Doyle ▴ 90
0
votes
3
replies
1.3k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 7 months ago by 4.1k • written 8 months ago by • 0
0
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0
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298
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News: Legacy Bioconductor Installation
Installation Bioconductor
8 months ago shepherl 4.1k
0
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0
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349
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
8 months ago info ▴ 10
0
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1
reply
344
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News: Bioconductor Build System
Builds Bioconductor
written 8 months ago by 4.1k
0
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0
replies
401
views
News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
8 months ago Maria Doyle ▴ 90
0
votes
1
reply
452
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
8 months ago • updated 6 months ago abhisek001 • 0
0
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6
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1.1k
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Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 7 months ago by • 0 • written 8 months ago by ▴ 10
3
votes
5
replies
971
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
8 months ago Patadù ▴ 20
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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280
`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…
Votes
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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