Showing : Bioconductor • reset
0
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2
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193
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 4 days ago by ▴ 10 • written 4 days ago by • 0
2
votes
1
reply
245
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bioconductor packages on bioconda
Bioconductor
updated 24 days ago by 67k • written 24 days ago by • 0
1
vote
3
replies
402
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
5 weeks ago • updated 4 weeks ago Abiologist • 0
10
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7
replies
1.8k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 5 weeks ago by 4.1k • written 22 months ago by ▴ 50
1
vote
0
replies
367
views
News: Bioconductor 3.20 is Released!
Bioconductor Release Software
7 weeks ago shepherl 4.1k
0
votes
0
replies
157
views
News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
8 weeks ago Maria Doyle ▴ 90
1
vote
3
replies
602
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 8 weeks ago by 67k • written 8 weeks ago by • 0
0
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0
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144
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
8 weeks ago shepherl 4.1k
1
vote
2
replies
533
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 11 weeks ago by 43k • written 3 months ago by ▴ 10
0
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0
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200
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
12 weeks ago Maria Doyle ▴ 90
1
vote
8
replies
578
views
Can't post a question?
Bioconductor
updated 14 days ago by • 0 • written 12 weeks ago by • 0
2
votes
2
replies
387
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How to read OSCA book?
BIOCON OSCA Bioconductor
3 months ago zr • 0
1
vote
2
replies
390
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
3 months ago katja.danielzik • 0
0
votes
2
replies
420
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concentration tables suitable as input for new packages?
Bioconductor
3 months ago katja.danielzik • 0
2
votes
0
replies
429
views
News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
3 months ago Maria Doyle ▴ 90
0
votes
5
replies
689
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 12 weeks ago by ▴ 760 • written 3 months ago by • 0
0
votes
0
replies
554
views
News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
3 months ago Maria Doyle ▴ 90
0
votes
1
reply
615
views
Unable to install/use limma
limma Bioconductor
updated 3 months ago by 67k • written 3 months ago by • 0
1
vote
2
replies
392
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Review process for delivering R packages
Bioconductor
3 months ago XFWu • 0
0
votes
1
reply
376
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
3 months ago Maria Doyle ▴ 90
1
vote
3
replies
796
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 3 months ago by • 0
0
votes
0
replies
352
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 3 months ago by ▴ 10 • written 4 months ago by ▴ 180
0
votes
0
replies
271
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
4 months ago Maria Doyle ▴ 90
0
votes
0
replies
298
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
4 months ago Maria Doyle ▴ 90
2
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4
replies
479
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Bioconductor Submission question
Bioconductor
4 months ago XFWu • 0
0
votes
0
replies
243
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
4 months ago shepherl 4.1k
0
votes
0
replies
263
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
4 months ago Maria Doyle ▴ 90
0
votes
4
replies
723
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
5 months ago • updated 4 months ago Jessica • 0
1
vote
0
replies
513
views
News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
4 months ago shepherl 4.1k
0
votes
2
replies
488
views
Installing Bioconductor
Bioconductor
updated 5 months ago by ▴ 760 • written 5 months ago by • 0
0
votes
0
replies
296
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 90
0
votes
0
replies
281
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
5 months ago Maria Doyle ▴ 90
0
votes
0
replies
350
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
5 months ago devarti.mahakalkar • 0
0
votes
3
replies
487
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
5 months ago Abiologist • 0
2
votes
2
replies
5.0k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 5 months ago by • 0 • written 7.4 years ago by ▴ 10
0
votes
1
reply
372
views
BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 5 months ago by 67k • written 5 months ago by • 0
4
votes
2
replies
784
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
6 months ago Rachael • 0
1
vote
5
replies
1.5k
views
Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 6 months ago by ★ 4.6k • written 6 months ago by • 0
0
votes
1
reply
323
views
How to access the Bioconductor in Windows
Bioconductor
updated 6 months ago by ★ 4.6k • written 6 months ago by • 0
0
votes
0
replies
275
views
EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
6 months ago Maria Doyle ▴ 90
0
votes
3
replies
1.2k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 6 months ago by 4.1k • written 6 months ago by • 0
0
votes
0
replies
271
views
News: Legacy Bioconductor Installation
Installation Bioconductor
7 months ago shepherl 4.1k
0
votes
0
replies
326
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
7 months ago info ▴ 10
0
votes
0
replies
277
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News: Bioconductor Build System
Builds Bioconductor
7 months ago shepherl 4.1k
0
votes
0
replies
369
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News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
7 months ago Maria Doyle ▴ 90
0
votes
1
reply
412
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
7 months ago • updated 5 months ago abhisek001 • 0
0
votes
6
replies
1.0k
views
Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 6 months ago by • 0 • written 7 months ago by ▴ 10
3
votes
5
replies
901
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
7 months ago Patadù ▴ 20
1
vote
0
replies
631
views
News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
9 months ago • updated 7 months ago shepherl 4.1k
0
votes
1
reply
305
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 7 months ago by 4.1k • written 7 months ago by • 0
50 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
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C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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