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BiocCheck
•
reset
7
votes
2
replies
1.7k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.6 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.3k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.4 years ago by
Steve Lianoglou
★ 13k • written 3.5 years ago by
pouryany
• 0
0
votes
2
replies
1.2k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
4.0 years ago • updated 3.9 years ago
ullrich
▴ 20
0
votes
2
replies
935
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 4.0 years ago by
shepherl
4.1k • written 4.0 years ago by
wewolski
▴ 10
0
votes
2
replies
1.8k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.4 years ago
Hector
• 0
0
votes
1
reply
1.2k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.4k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.8 years ago
j.flesch
▴ 10
0
votes
12
replies
1.6k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.9 years ago
waterincan
• 0
0
votes
2
replies
1.2k
views
BiocCheck package size
BiocCheck
updated 6.0 years ago by
Hervé Pagès
16k • written 6.0 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
5.5k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.9 years ago by
shepherl
4.1k • written 6.9 years ago by
xyluo1991
• 0
2
votes
5
replies
2.3k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.9 years ago by
Marcel Ramos
700 • written 9.0 years ago by
richierocks
▴ 40
0
votes
1
reply
1.6k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.5 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.2k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.5 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.5 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.5k
views
BiocCheck path escape issue
bioccheck
bug
8.0 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.1k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
ihnatova
• 0
3
votes
10
replies
3.2k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.6 years ago by
Marek Gierlinski
▴ 30 • written 8.5 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.6k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
9.1 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.2k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 with proteomics data
by
wook2014
• 0
You may need to do NA imputation before give the data to DEseq2 and there are study on DEseq2 performance on proteomics data, like :https:/…
Answer: Unable to install a forged BSgenome package
by
James W. MacDonald
68k
Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […
Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
by
James W. MacDonald
68k
Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…
Comment: How can I correctly use phyloseq with Docker?
by
James W. MacDonald
68k
You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel
Comment: How can I correctly use phyloseq with Docker?
by
James W. MacDonald
68k
You show how you modified the container, but not how you are running it, which is the critical part.
Votes
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
Comment: Filtering after DESeq
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