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BiocCheck
•
reset
7
votes
2
replies
1.4k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.1 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.2k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.0 years ago by
Steve Lianoglou
★ 13k • written 3.0 years ago by
pouryany
• 0
0
votes
2
replies
1.1k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.5 years ago • updated 3.4 years ago
ullrich
▴ 20
0
votes
2
replies
840
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.6 years ago by
shepherl
4.1k • written 3.6 years ago by
wewolski
▴ 10
0
votes
2
replies
1.6k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
3.9 years ago
Hector
• 0
0
votes
1
reply
1.0k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.2 years ago by
James W. MacDonald
67k • written 5.2 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.1k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.3 years ago
j.flesch
▴ 10
0
votes
12
replies
1.3k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.4 years ago
waterincan
• 0
0
votes
2
replies
1.1k
views
BiocCheck package size
BiocCheck
updated 5.5 years ago by
Hervé Pagès
16k • written 5.5 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
4.8k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.4 years ago by
shepherl
4.1k • written 6.4 years ago by
xyluo1991
• 0
2
votes
5
replies
2.1k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.4 years ago by
Marcel Ramos
700 • written 8.5 years ago by
richierocks
▴ 40
0
votes
1
reply
1.5k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.0 years ago
Paul Brennan
▴ 10
6
votes
3
replies
2.9k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.0 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.0 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.4k
views
BiocCheck path escape issue
bioccheck
bug
7.6 years ago • updated 7.5 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
978
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
ihnatova
• 0
3
votes
10
replies
2.8k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.1 years ago by
Marek Gierlinski
▴ 30 • written 8.0 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.5k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.6 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.0k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.7 years ago by
Dan Tenenbaum
★ 8.2k • written 8.7 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
• 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
• 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: ESTMATE, MCPcounter, EPIC, xCell input
by
Kang
• 0
These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio
by
Kang
• 0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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