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BiocCheck
•
reset
7
votes
2
replies
1.4k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.2 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.2k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.0 years ago by
Steve Lianoglou
★ 13k • written 3.0 years ago by
pouryany
• 0
0
votes
2
replies
1.1k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.5 years ago
ullrich
▴ 20
0
votes
2
replies
847
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.6 years ago by
shepherl
4.1k • written 3.6 years ago by
wewolski
▴ 10
0
votes
2
replies
1.6k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.0 years ago
Hector
• 0
0
votes
1
reply
1.0k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.3 years ago by
James W. MacDonald
67k • written 5.3 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.2k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.3 years ago
j.flesch
▴ 10
0
votes
12
replies
1.4k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.4 years ago
waterincan
• 0
0
votes
2
replies
1.1k
views
BiocCheck package size
BiocCheck
updated 5.6 years ago by
Hervé Pagès
16k • written 5.6 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
4.8k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.4 years ago by
shepherl
4.1k • written 6.4 years ago by
xyluo1991
• 0
2
votes
5
replies
2.1k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.4 years ago by
Marcel Ramos
700 • written 8.5 years ago by
richierocks
▴ 40
0
votes
1
reply
1.5k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.1 years ago
Paul Brennan
▴ 10
6
votes
3
replies
2.9k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.1 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.4k
views
BiocCheck path escape issue
bioccheck
bug
7.6 years ago • updated 7.5 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
985
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
ihnatova
• 0
3
votes
10
replies
2.8k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.1 years ago by
Marek Gierlinski
▴ 30 • written 8.1 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.5k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.6 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.0k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.7 years ago by
Dan Tenenbaum
★ 8.2k • written 8.7 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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