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Bioc-devel
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reset
1
vote
2
replies
1.5k
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Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
5.6 years ago
Matthew Thornton
▴ 380
1
vote
5
replies
1.4k
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
6.0 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.5k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 6.1 years ago by
shepherl
4.1k • written 6.1 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.3k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.6 years ago
Alejandro Reyes
★ 1.9k
6
votes
3
replies
2.9k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.1 years ago by
Paul Brennan
▴ 10
0
votes
0
replies
2.4k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
7.3 years ago
Bohdan Khomtchouk
▴ 10
3
votes
2
replies
1.3k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
mlbendall
• 0
2
votes
8
replies
4.0k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Peter Hickey
▴ 740
1
vote
3
replies
1.8k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
MarcinKosiński
• 0
3
votes
6
replies
2.4k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Nathan Sheffield
▴ 10
5
votes
3
replies
1.8k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
9.5 years ago
flying-sheep
▴ 10
0
votes
2
replies
2.3k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.7 years ago
mjsduncan
• 0
0
votes
1
reply
2.1k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
Tiphaine Martin
▴ 40
1
vote
1
reply
1.8k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
Tiphaine Martin
▴ 40
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Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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