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Bioc-devel
•
reset
1
vote
2
replies
1.6k
views
Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils
Bioc-devel
5.9 years ago
Matthew Thornton
▴ 380
1
vote
5
replies
1.5k
views
[DEVELOPMENT] Trying to use development version of Bioconductor, needs R 3.6?...
developers
bioc-devel
6.3 years ago
Casper van Mourik
• 0
0
votes
2
replies
1.6k
views
Circular dependencies between data and software packages: how best to avoid
developers
bioc-devel
package development
circular dependencies
updated 6.4 years ago by
shepherl
4.1k • written 6.4 years ago by
Tim Triche
★ 4.2k
3
votes
1
reply
2.4k
views
News:
Latin American BioC Developers Workshop 2018
bioconductor
developers
bioc-devel
News
6.9 years ago
Alejandro Reyes
★ 1.9k
6
votes
3
replies
3.1k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.3 years ago by
Paul Brennan
▴ 10
0
votes
0
replies
2.5k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
7.6 years ago
Bohdan Khomtchouk
▴ 10
3
votes
2
replies
1.3k
views
Changing lead developer for existing package
developers
bioc-devel
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
mlbendall
• 0
2
votes
8
replies
4.1k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
Peter Hickey
▴ 750
1
vote
3
replies
1.9k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 9.3 years ago by
Dan Tenenbaum
★ 8.2k • written 9.3 years ago by
MarcinKosiński
• 0
3
votes
6
replies
2.5k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 9.8 years ago by
Dan Tenenbaum
★ 8.2k • written 9.8 years ago by
Nathan Sheffield
▴ 10
5
votes
3
replies
1.9k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
9.8 years ago
flying-sheep
▴ 10
0
votes
2
replies
2.4k
views
Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
10.0 years ago
mjsduncan
• 0
0
votes
1
reply
2.2k
views
installation of GenomicRanges package in Rdevel fails
installation
bioc-devel
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
Tiphaine Martin
▴ 40
1
vote
1
reply
1.9k
views
Using hash packages with package:rtracklayer, GenomicRanges, Gviz, IRanges, biomaRt conflict
software error
bioc-devel
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
Tiphaine Martin
▴ 40
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Comment: Use of limma R package with targeted proteomics for DE analysis
by
svlachavas
▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output
by
ATpoint
★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression
by
Jane
• 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga
by
Jane
• 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
by
Matthew McCormack
▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
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