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DropletUtils Bioc-devel

5.6 years ago Matthew Thornton ▴ 380

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developers bioc-devel

6.0 years ago Casper van Mourik • 0

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developers bioc-devel package development circular dependencies

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6.6 years ago Alejandro Reyes ★ 1.9k

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bioccheck roxygen2 warning bioc-devel package development

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subversion bioc-devel package development usedevel Tutorial

7.3 years ago Bohdan Khomtchouk ▴ 10

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updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by mlbendall • 0

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rtracklayer bioc-devel ssl openssl

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software bioc-devel developers R

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docker bioc-devel

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readvcf plink file conversion bed bioc-devel

9.6 years ago mjsduncan • 0

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installation bioc-devel

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by Tiphaine Martin ▴ 40

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software error bioc-devel

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by Tiphaine Martin ▴ 40

14 results • Page 1 of 1

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Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

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