Showing : AnnotationHub • reset
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138
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Help using reduceSimMatrix with a custom annotation
AnnotationHub GOSemSim rrvgo
7 weeks ago daccar98 • 0
5
votes
13
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1.7k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
10 weeks ago • updated 9 weeks ago KABILAN • 0
0
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3
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722
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub AnnotationDbi AnnotationForge
4 months ago Anna • 0
1
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5
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935
views
EnsDb: bad_weak_ptr
AnnotationHub BiocFileCache
6 months ago Lluís Revilla Sancho ▴ 760
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5
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1.2k
views
Cannot connect to annotationhub server
AnnotationHub ExperimentHub
updated 6 months ago by 4.1k • written 6 months ago by • 0
0
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0
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302
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News: AnnotationHub and ExperimentHub Access Downtime
AnnotationHub ExperimentHub
6 months ago shepherl 4.1k
1
vote
1
reply
385
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub ExperimentHub
updated 7 months ago by 67k • written 7 months ago by • 0
6
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12
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7.1k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache AnnotationHub ExperimentHub
14 months ago • updated 8 months ago shepherl 4.1k
10
votes
41
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7.5k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 7 months ago by • 0 • written 6.1 years ago by ★ 4.1k
1
vote
6
replies
997
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 8 months ago by ▴ 200 • written 9 months ago by • 0
2
votes
1
reply
735
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology
updated 10 months ago by 43k • written 10 months ago by • 0
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0
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436
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Annotatr Duplicate Entries
annotatr AnnotationHub
11 months ago hayleyw • 0
2
votes
28
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5.6k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub AnnotationForge Pseudomonas_aeruginosa
updated 13 months ago by 67k • written 2.1 years ago by ▴ 10
3
votes
4
replies
1.9k
views
Annotation hub and clusterProfiler errors
clusterProfiler Annotationhub
updated 14 months ago by ★ 4.1k • written 14 months ago by • 0
1
vote
2
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992
views
AnnotationHub data for Mus musculus seems to be missing, while previously it was there
tximeta AnnotationHub AnnotationHubData
14 months ago Thon • 0
0
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1
reply
907
views
multiGSEA package in R not appropriately assigning metabolites to pathways?
metaboliteIDmapping AnnotationHub multiGSEA
23 months ago Thomas • 0
2
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2
replies
1.0k
views
[BigWigFile] import as RLE vs default and length comparaison
BSgenome.Hsapiens.UCSC.hg19 rtracklayer AnnotationHub
2.3 years ago Lenny186 • 0
0
votes
3
replies
1.8k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
2.4 years ago sandmann.t ▴ 70
9
votes
21
replies
16k
views
ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub dplyr
updated 2.4 years ago by ▴ 10 • written 4.1 years ago by ▴ 40
0
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2
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2.2k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 2.8 years ago by 4.1k • written 2.8 years ago by ▴ 70
0
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4
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1.5k
views
AnnotationHub
AnnotationHub
2.8 years ago junliqilinpan • 0
4
votes
6
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3.1k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub OrganismDbi org.Hs.eg.db
updated 2.8 years ago by 52k • written 2.8 years ago by • 0
9
votes
14
replies
7.8k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 5 months ago by 4.1k • written 2.9 years ago by ▴ 40
0
votes
2
replies
1.3k
views
AnnotationHub problem
AnnotationHub
3.0 years ago Jianxuan • 0
4
votes
8
replies
2.4k
views
Problem converting transcript to genomic coordinates with Annotation Hub
AnnotationHub
3.1 years ago • updated 2.6 years ago nattzy94 ▴ 20
1
vote
3
replies
1.5k
views
How delete the AnnotationHub downloaded datasets
AnnotationHub
updated 3.2 years ago by ★ 6.6k • written 3.2 years ago by • 0
2
votes
10
replies
2.9k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by • 0
0
votes
0
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740
views
LRBaseDbi error
LRBaseDbi AnnotationHub
3.3 years ago Francois Marchildon ▴ 20
1
vote
2
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1.8k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
0
votes
1
reply
1.3k
views
News: Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache AnnotationHub ExperimentHub cache
3.7 years ago shepherl 4.1k
0
votes
3
replies
5.3k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
updated 2.4 years ago by • 0 • written 3.8 years ago by ▴ 20
3
votes
11
replies
6.1k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler AnnotationHub GO uniprot
updated 10 months ago by ★ 4.1k • written 3.9 years ago by • 0
11
votes
13
replies
5.2k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
4.1 years ago • updated 3.9 years ago rohitsatyam102 ▴ 20
3
votes
2
replies
2.4k
views
Issue with AnnotationHub
AnnotationHub
4.1 years ago rahnaman ▴ 10
1
vote
2
replies
1.4k
views
How to mimic biomaRt results with AnnotationHub?
biomaRt AnnotationHub
4.1 years ago Ezgi ▴ 60
1
vote
3
replies
1.3k
views
AnnotationHub: failed to load resource name
AnnotationHub
4.3 years ago ben.ponv • 0
4
votes
17
replies
3.0k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by ▴ 10
4
votes
2
replies
2.0k
views
News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb ensembldb annotation AnnotationHub News
4.3 years ago Johannes Rainer ★ 2.1k
8
votes
16
replies
8.0k
views
Cannot connect to ExperimentHub server
ExperimentHub AnnotationHub SingleR
updated 4.4 years ago by 4.1k • written 4.4 years ago by ▴ 660
0
votes
2
replies
1.6k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.4 years ago by 67k • written 4.4 years ago by ★ 2.0k
0
votes
3
replies
1.4k
views
extracting the genes associated with a specific pathway
pathway KEGG annotation annotationhub
updated 4.6 years ago by 67k • written 4.6 years ago by ▴ 670
3
votes
6
replies
2.8k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 2.4 years ago by 4.1k • written 4.6 years ago by ★ 2.0k
2
votes
8
replies
2.1k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error enrichGO annotationHub clusterProfiler Job
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
1
vote
5
replies
2.0k
views
AnnotationHub; Error: failed to load resource; Timeout was reached: [annotationhub.bioconductor.org]
annotationhub
updated 4.8 years ago by 4.1k • written 4.8 years ago by • 0
0
votes
2
replies
1.2k
views
hg38 tracks for AnnotationHub
annotationhub
4.8 years ago Michael Love 43k
0
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1
reply
1.1k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 4.8 years ago by 4.1k • written 4.8 years ago by • 0
0
votes
8
replies
3.3k
views
I can't use AnnotationHub()
AnnotationHub
5.0 years ago 755606975 • 0
1
vote
3
replies
2.6k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
5.1 years ago dmgatti ▴ 10
3
votes
0
replies
1.4k
views
News: EnsDb databases for Ensembl release 98 provide now also transcripts' GC content
annotation ensembldb EnsDb AnnotationHub News
5.1 years ago Johannes Rainer ★ 2.1k
2
votes
2
replies
1.5k
views
how to choose annotation file in AnnotationHub web server
annotation AnnotationHub
5.1 years ago 15958021290 ▴ 10
50 results • Page 1 of 1
Recent ...
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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