Showing : AffymetrixChip • reset
2
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112
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 2 days ago by 67k • written 2 days ago by • 0
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200
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Remove Control Probes from Affymetrix Human Gene 1.0 ST Array probeset version
AffymetrixDataTestFiles AffymetrixChip
4 months ago drexjaramel • 0
0
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4
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693
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Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
8 months ago Efra • 0
0
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1
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765
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Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
affydata hgu133plus2.db AffymetrixChip
updated 16 months ago by ★ 4.5k • written 16 months ago by ▴ 20
1
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2
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740
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Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip
17 months ago alexia.brunel • 0
1
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4
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969
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How to annotate mir4.1 arrays?
AffymetrixChip miRNA oligo
18 months ago • updated 15 months ago richardallenfriedmanbrooklyn ▴ 30
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716
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Volcano plot
limma AffymetrixChip
18 months ago e.gunaut • 0
2
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2
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883
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Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
19 months ago Abdul ▴ 20
1
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1
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1.0k
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Strange error with RMA during Affymetrix data analysis
AffymetrixChip RMA
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by ▴ 20
2
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2
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721
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2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
2.1 years ago evan.j.williams ▴ 10
2
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2
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1.1k
views
How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array
pd.hugene.1.0.st.v1 oligo AffymetrixChip
2.5 years ago • updated 2.4 years ago Yang Shi ▴ 10
2
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5
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1.3k
views
Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation
pd.hugene.1.0.st.v1 oligo AffymetrixChip
2.5 years ago Yang Shi ▴ 10
2
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4
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1.4k
views
Robust Multi-array Average could get negative value or not?
pd.hg.u219 oligo AffymetrixChip
2.5 years ago Yang Shi ▴ 10
4
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10
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2.3k
views
Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
2.5 years ago Yang Shi ▴ 10
0
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2
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969
views
How to extract probe level intensity after rma() normalization
MicroarrayData AffymetrixChip
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
0
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4
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1.1k
views
getProbeInfo and exprs return two different dimensions
CELfile MicroarrayData AffymetrixChip
2.7 years ago • updated 2.6 years ago Haoran • 0
2
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2
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1.2k
views
Subscript out of bounds while normalising using affy::rma()
Normalization affy AffymetrixChip
3.5 years ago geoffrey ▴ 10
0
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1
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1.1k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
3
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2
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1.7k
views
Trouble getting probe ID info from mouse4302.db annotation package with a specific RefSeq ID.
annotationdbi mouse4302 affymetrixchip annotationdata R
updated 9.0 years ago by 67k • written 9.0 years ago by • 0
0
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4
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2.5k
views
HUgene 2.0 analyses heatmap
hugene20 heatmap affymetrixchip
updated 9.5 years ago by ▴ 130 • written 9.5 years ago by ▴ 10
2
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5
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3.2k
views
miRNA expression analysis : annotation
miRNA annotation affymetrixchip
9.6 years ago aswathym ▴ 10
0
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0
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1.3k
views
Correst use of GeneOverlap R Package
GeneOverlap DEGgenes affymetrixchip bioconductor
9.6 years ago svlachavas ▴ 830
1
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3
replies
1.7k
views
BioNet package network analysis important questions for tutorial
BioNet bioconductor affymetrixchip network analysis
9.7 years ago svlachavas ▴ 830
5
votes
9
replies
3.5k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor expresiondataset affymetrixchip differential gene expression
9.7 years ago svlachavas ▴ 830
1
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4
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3.7k
views
GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events
affymetrixchip GenechipHumanTranscriptomeArray2.0 exon array analysis
9.7 years ago svlachavas ▴ 830
3
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11
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3.8k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor mas5 perfectmatch affymetrixchip filter
updated 9.7 years ago by 67k • written 9.8 years ago by ▴ 830
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0
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2.4k
views
MAplot: Binning grid too coarse for current (small) bandwidth
affy affymetrix affymetrics affymetrixchip
9.9 years ago neverstop • 0
0
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1
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2.0k
views
Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 100
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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