Showing : ASPLI • reset
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Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
ASpli
updated 10 months ago by 68k • written 11 months ago by • 0
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430
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I am trying to detect alternative splicing.
ASpli
12 months ago Sebashish • 0
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0
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870
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Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
14 months ago vipul14 • 0
5
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6
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1.5k
views
ASpli checks fail on Linux due to missing dependency to statmod
ASpli
updated 21 months ago by 52k • written 21 months ago by ▴ 10
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1
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1.1k
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Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors Aspli
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
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3
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5.2k
views
ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 19 months ago by • 0 • written 2.5 years ago by • 0
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0
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869
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ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli alterna AlternativeSplicing
3.2 years ago hamza_karakurt ▴ 60
6
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10
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2.2k
views
ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted assignments
ASpli
updated 3.7 years ago by • 0 • written 4.0 years ago by ▴ 20
0
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1
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2.0k
views
ASpli: Error in h(simpleError(msg, call))
ASpli
updated 2.8 years ago by • 0 • written 3.7 years ago by • 0
1
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3
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1.4k
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ASpli error message
ASpli
updated 3.2 years ago by ▴ 60 • written 4.0 years ago by ▴ 50
1
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11
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2.5k
views
Aspli: error with gbCounts
Aspli ASpli
4.1 years ago • updated 4.0 years ago jbono ▴ 10
0
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1
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1.0k
views
ASpli package function plotGenomicRegions fails in windows
ASpli plotGenomicRegions
updated 4.7 years ago by ▴ 50 • written 5.8 years ago by • 0
0
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1
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815
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function plotgenomicregions does not appear in the aspli package installed in windows
software error aspli plotgenomicregions windows
5.0 years ago joanmarquez21 • 0
3
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2
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1.3k
views
ASpli readCounts never ends!
aspli readCounts rna-seq alternative splicing AS
6.2 years ago fernandalpcosta ▴ 10
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0
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1.1k
views
ASpli AsDiscover error
R alternative splicing ASpli AsDiscover
6.4 years ago • updated 6.3 years ago abdul rawoof ▴ 60
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0
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1.2k
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ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq alternative splicing ASpli
6.4 years ago nicolas.guyon2 • 0
0
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0
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1.0k
views
ASPLI (RNAseq AS) R package error
rnaseq ASPLI
6.8 years ago dina.hesham139 • 0
0
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0
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1.3k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
6.9 years ago arphatak • 0
0
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1
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1.2k
views
Splicing analysis with ASpli
ASpli
updated 7.1 years ago by ★ 1.6k • written 7.1 years ago by ▴ 30
2
votes
2
replies
1.7k
views
ASpli ERROR during the counting step
ASpli rnaseq
updated 7.1 years ago by ▴ 10 • written 7.4 years ago by ▴ 10
20 results • Page 1 of 1
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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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