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6.9 years ago Alejandro Reyes ★ 1.9k
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7.5 years ago • updated 7.3 years ago Aaron Lun ★ 28k
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7.5 years ago Valerie Obenchain ★ 6.8k
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updated 7.5 years ago by 25k • written 7.5 years ago by 21k
533 results • Page 8 of 11
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
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No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
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