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536 results • Page 1 of 11
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Comment: error in ChAMP loading file by barkerxavierr • 0
You have saved your pd object as 'SampleSheet', which is not what champ.load is reading in (it's finding the semi-colon separated file call…
Answer: DiffBind - question on the use of filtered or unfiltered input data by apkffh4x • 0
Yes, you can use HR peaks as input to DiffBind, especially if your goal is high-confidence differential binding, but using all peaks provid…
Answer: Log2foldchange strange behavior by ATpoint ★ 4.8k
The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…
Comment: DeSeq Strategies for run to run Replication by i.c.denhond • 0
Dear Michael, could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …
Comment: Log2foldchange strange behavior by RambakKulit • 0
Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…
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