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following contributors:
4 years ago
United States
Answer: error while installing " BSgenome.Hsapiens.UCSC.hg19"
4 years ago
Seattle, WA, United States
Answer: How to retrieve genomic coordinates for a list of entrezID and their respective
4 years ago
Germany
Answer: DESeq2 variance stabilizing transformation: why is assay() different from getVar
4 years ago
Germany
Answer: WHat is the difference between DEG and TopVarGenes in DESEq2?
4 years, 1 month ago
Wageningen University, Wageningen, the …
Answer: How to remove dendrogram from pheatmaps?
4 years, 1 month ago
United States
Answer: se does not inherit from class SummarizedExperiment
4 years, 1 month ago
EMBL Heidelberg
Answer: BiomaRt::getBM Error in UseMethod(filter_)
4 years, 1 month ago
United States
Answer: Strategy to perform DESeq, DEXSeq workflow
4 years, 1 month ago
United States
Answer: Changing Row Names of MultiAssayExperiment Assay
4 years, 1 month ago
United States
Answer: CRISPRSeek Results files column interpretation
4 years, 1 month ago
Republic of Ireland
A: Coding vs Noncoding Genes in Hit List
4 years, 1 month ago
Republic of Ireland
A: DESeq2 Multiple Conditions: Do I need a "reference"?
4 years, 1 month ago
Republic of Ireland
A: Is there a way to save and open an expression set?
4 years, 1 month ago
Republic of Ireland
A: DEG analysis for Micro array affymetrix
4 years, 1 month ago
Republic of Ireland
C: DESeq2 rlog blinding if calculating variance of expression?
4 years, 1 month ago
Republic of Ireland
A: Annotation for Affymetrix GeneChip PrimeView.
4 years, 1 month ago
United States
Answer: Paired Time course Experiment Design on edgeR between and within groups
4 years, 2 months ago
Netherlands
A: Controlling numerical covariates: differential gene expression with limma voom
4 years, 2 months ago
WEHI, Melbourne, Australia
Answer: How to get gene length for RPKM directly from DGEList object in latest edgeR?
4 years, 2 months ago
Basel
A: For comparimg 4 or more tissue types using DRIMSeq
4 years, 2 months ago
United States
A: Is it capable to analysis the unbalanced time course experiment by DESeq2?
4 years, 2 months ago
WEHI, Melbourne, Australia
A: Comparing DEseq2 and Limma program, results not consistent
4 years, 3 months ago
United States
A: How to add colors to the PCA made using SNPRelate
4 years, 3 months ago
United States
A: RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
4 years, 3 months ago
WEHI, Melbourne, Australia
A: Differential gene expression associated with change in blood parameter following
4 years, 3 months ago
United States
A: Building an HDF5Array/DelayedArray object incrementally
4 years, 3 months ago
United States
A: Calculating standard deviation for a few genes using RNAseq data
4 years, 3 months ago
WEHI, Melbourne, Australia
A: TMM normalization on sparse datasets
4 years, 3 months ago
United States
A: Is the ExpressionSet Class Deprecated?
4 years, 3 months ago
Republic of Ireland
A: How do I subset a GRanges object based on chromosome (and approximate region)?
4 years, 3 months ago
United States
A: logFC when counts are zero across all samples in the two groups
4 years, 4 months ago
United States
A: Error in DESeqDataSet : some values in assay are not integers
4 years, 4 months ago
Republic of Ireland
A: deseq2 normalized data with heatmap
4 years, 4 months ago
WEHI, Melbourne, Australia
A: Moderated F-test followed by moderated t-test in limma
4 years, 4 months ago
EMBL Heidelberg
A: Getting rs ids using chr coordinates | Biomart
4 years, 5 months ago
United States
A: Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
4 years, 5 months ago
United States
A: Odd DESeq2 results - high significance in genes with too many zeros
4 years, 5 months ago
Germany
C: Rsamtools is not available for (for R version 4.0.2)
4 years, 6 months ago
United States
A: Using spike-in RNA for normalization of Salmon counts imported using Tximport
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