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3 years, 1 month ago
United States
Answer: DeSeq2 Comparing One group vs Two groups
3 years, 2 months ago
United States
Answer: biomaRt error: database disk image is malformed
3 years, 3 months ago
United States
Answer: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
3 years, 4 months ago
Republic of Ireland
Answer: ylim and xlim in Enhanced Volcano
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Query regarding the use of eBayes + topTable and treat + topTreat
3 years, 4 months ago
WEHI, Melbourne, Australia
Answer: Query regarding the use of eBayes + topTable and treat + topTreat
3 years, 5 months ago
Wageningen University, Wageningen, the …
Answer: [PrimeView] Affymetrix Human Gene Expression Array
3 years, 5 months ago
Cambridge, UK
Answer: how to construct a DBA object from count matrix
3 years, 5 months ago
EMBL Heidelberg
Answer: Temporal directory setting for DelayedArray
3 years, 5 months ago
United States
Answer: R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" genera
3 years, 6 months ago
Wageningen University, Wageningen, the …
Answer: GoSemSim
3 years, 7 months ago
United States
Answer: How to run getSeq() on a GRanges object with invalid DNA letters?
3 years, 7 months ago
United States
Answer: Concatenating expression counts from different RNA-seq quantification tools
3 years, 7 months ago
Seattle, WA, United States
Answer: problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignmen
3 years, 7 months ago
United States
Answer: Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve
3 years, 7 months ago
Max Planck Institute for molecular Gene…
Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3 years, 7 months ago
Max Planck Institute for molecular Gene…
Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3 years, 7 months ago
The city by the bay
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
3 years, 7 months ago
Novartis Institutes for BioMedical Rese…
Answer: DEXSeq: What's the best way to map an exon counting bin, e.g. E002 to exon(s) or
3 years, 8 months ago
Cambridge, UK
Answer: How to retrieve peak summit from DiffBind peaks
3 years, 8 months ago
United States
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
3 years, 8 months ago
United States
C: Limma: how to get same output as topTable but for all the genes ?
3 years, 9 months ago
WEHI, Melbourne, Australia
A: Effect size similar to Cohen's d in limma
3 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Weird MAplot with DEGs lying along the diagonals
3 years, 9 months ago
Republic of Ireland
Answer: How to use combat in order to remove batch effects?
3 years, 9 months ago
Republic of Ireland
Answer: DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
3 years, 10 months ago
Seattle, WA, United States
Answer: Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3
3 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Why some statistically differently expressed genes are not DEGs?
3 years, 10 months ago
Republic of Ireland
Answer: analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
3 years, 10 months ago
WEHI, Melbourne, Australia
Answer: Getting differentially expressed genes for time points
3 years, 10 months ago
United States
Answer: Major on-target peak not appearing in GUIDEseq results
3 years, 10 months ago
United States
Answer: Limma outputs different results for same sample?
3 years, 11 months ago
United States
Answer: log2 Fold Change in DESeq2 is not identical to FC calculated from normalized cou
3 years, 11 months ago
United States
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
3 years, 11 months ago
United States
Answer: Checking/updating package versions
3 years, 11 months ago
United States
Answer: Issues with installation status of R package rtracklayer
3 years, 12 months ago
United States
A: Unexpected error with topGO, cannot build topGOdata object
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