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9 years, 4 months ago
The city by the bay
edgeR time series analysis with no replicates
9 years, 4 months ago
The city by the bay
Finding DE genes across any condition with Limma
9 years, 4 months ago
United States
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
9 years, 4 months ago
United States
Get a complete view of a long DNA sequence of a Biostrings object in R
9 years, 4 months ago
United States
Limma contrasts with more than one continious variable
9 years, 4 months ago
United States
Best way to convert uniprot accessions to entrez gene identifiers in R
9 years, 4 months ago
United States
HTMLReport of DESeq2 results with Ensembl Gene Ids
9 years, 4 months ago
United States
What is Nontrivial node in topGO analysis?
9 years, 4 months ago
United States
Extract specific contrast from paired multifactor design matrix
9 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
EdgeR Multifactorial design with batch effect-trouble with defining contrasts
9 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
Correct assumptions of using limma moderated t-test
9 years, 4 months ago
United States
How to use GenomicRanges to find overlaps by percentage covered of interval
9 years, 4 months ago
United States
How to find particular types of overlap with GenomicRanges
9 years, 4 months ago
United States
DESeq2 results(): 'name' argument and ?equivalent? numeric contrast produce different results
9 years, 4 months ago
United States
All same padj of contrast results in the DESeq2
9 years, 4 months ago
United States
[DESeq2] time series strain-specific differences over time
9 years, 4 months ago
Australia/Melbourne
Use BAM file created from subjunc function (Rsubread package) for feature counts?
9 years, 4 months ago
United States
readGAlignmentPairs slow in problematic region
9 years, 4 months ago
The city by the bay
A: Using edgeR or DESeq2 to analyze allele-specific expression?
9 years, 4 months ago
The city by the bay
A: Limma: Continuous variable model designs
9 years, 4 months ago
The city by the bay
A: design matrix for cross-over + repeated measures in limma?
9 years, 4 months ago
United States
A: Help with 2x2 factorial for using LIMMA
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
9 years, 4 months ago
United States
A: getting the longest transcript by gene from Refseq
9 years, 4 months ago
The city by the bay
A: Differential expression analysis: Continuous variable
9 years, 4 months ago
United States
A: How to use brainarray custom cdf with oligo package?
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Technical normalization of single channel array data with Limma?
9 years, 4 months ago
United States
A: org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
9 years, 4 months ago
The city by the bay
A: edgeR/Deseq2 for differential OTU abundance in a mock 16s community?
9 years, 4 months ago
China/Guangzhou/Southern Medical Univer…
A: ggtree - trouble displaying longer label names
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Why is the "detection" value given by lumidat the inverse (i.e. 1-x) of the "det
9 years, 4 months ago
Australia
Why is the "detection" value given by lumidat the inverse (i.e. 1-x) of the "detection_pval" given by GenomeStudio?
9 years, 4 months ago
The city by the bay
A: edgeR time series analysis with no replicates
9 years, 5 months ago
WEHI, Melbourne, Australia
A: How to carry out a gene set analysis using custom gene sets?
9 years, 5 months ago
United States
A: How can I create ChipDb for Solanum lycopersicum?
9 years, 5 months ago
The city by the bay
A: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
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